Bond stability

Only electrons in bonds that are f3 to the positively charged carbon can stabilize a car bocation by hyperconjugation Moreover it doesn t matter whether H or another carbon IS at the far end of the (3 bond stabilization by hyperconjugation will still operate The key point is that electrons m bonds that are (3 to the positively charged carbon are more stabilizing than electrons m an a C—H bond Thus successive replacement of first one... 

As Figure 25 8 shows the glucose units of cellulose are turned with respect to each other The overall shape of the chain however is close to linear Consequently neigh boring chains can pack together m bundles where networks of hydrogen bonds stabilize the structure and impart strength to cellulose fibers... 

Hydrogen bonding stabilizes some protein molecules in helical forms, and disulfide cross-links stabilize some protein molecules in globular forms. We shall consider helical structures in Sec. 1.11 and shall learn more about ellipsoidal globular proteins in the chapters concerned with the solution properties of polymers, especially Chap. 9. Both secondary and tertiary levels of structure are also influenced by the distribution of polar and nonpolar amino acid molecules relative to the aqueous environment of the protein molecules. Nonpolar amino acids are designated in Table 1.3. 

The secondary structures we have described here are all found commonly in proteins in nature. In fact, it is hard to find proteins that do not contain one or more of these structures. The energetic (mostly H-bond) stabilization afforded by a-helices, /3-pleated sheets, and /3-turns is important to proteins, and they seize the opportunity to form such structures wherever possible. 

A similar effect is produced by cocrystallization with protic solvents capable of forming a hydrogen bond-stabilized environment. Thus, dihydropyrimidine 47 (R = R = aryl,R = R = COOR, R = H) cocrystallizes with water (1 1) exclusively as the 1,6 tautomer (98T9837). 2,4,6,6-Tetraphenyldihydropyrimidine 47 (R = R = R = R = Ph, R = H) exists as the 1,6 tautomer in its solvate with... 

More recently, Stepanov et al. (1989) investigated the acid-base properties of the zwitterion 3.22 which is obtained in the diazotization of 5-amino-3-nitro-l,2,4-triazole. Under alkaline conditions the (Z)-diazoate dianion 3.23 is formed. It can be isomerized thermally to give the (E)-diazoate dianion 3.24. If the solution of this compound is acidified, the primary addition of a proton takes place at the anionic ring nitrogen yielding 3.25, and subsequently the hydrogen-bond-stabilized (Z)-iso-mer (3.26). Further acidification gives the nitrosoamine (3.27). 

Coordinating properties of the amide bond. Stability and structure of metal ion complexes of peptides and related ligands. H. Sigel and R. B. Martin, Chem. Rev., 1982, 82, 385-426 (409). 

Fig. 9. — Antiparallel packing arrangement of the 3-fold helices of (1— 4)-(3-D-xylan (7). (a) Stereo view of two unit cells roughly normal to the helix axis and along the short diagonal of the ab-plane. The two helices, distinguished by filled and open bonds, are connected via water (crossed circles) bridges. Cellulose type 3-0H-0-5 hydrogen bonds stabilize each helix, (b) A view of the unit cell projected along the r-axis highlights that the closeness of the water molecules to the helix axis enables them to link adjacent helices.

Fig. 16.—Antiparallel packing arrangement of 3-fold sodium pectate (13) helices, (a) Stereo view of two unit cells roughly normal to the fcc-plane. The helix at the center (open bonds) is antiparallel to the two in the front (tilled bonds). Intrachain hydrogen bonds stabilize each helix. Sodium ions (crossed circles) and water molecules (open circles) connect adjacent helices, (b) A view of the unitcell contents down the t -axis highlights the ions and water molecules located between the helices.

Fig. 35.—(a) Stereo view of about a turn of the 3-fold double helix of potassium gellan (41). The two chains are drawn in open and filled bonds for distinction. Both intra- and inter-chain hydrogen bonds stabilize the helix. The vertical line is the helix axis. Octahedrally coordinated potassium ions (crossed circles) and triply hydrogen-bonded water molecules (open circles) located above the ions are integral components of the structure of 41. 

In some molecules, the twist conformation is actually preferred. In all cis-2,5-di-fert-butyl-l,4-cyclohexanediol, hydrogen bonding stabilizes the otherwise high-energy form and 1,3-dioxane 89 exists largely as the twist conformation shown. Of course, in certain bicyclic compounds, the six-membered ring is forced to maintain a boat or twist conformation, as in norbornane or twistane. 

Covalent Noncovalent Bonds Stabilize Biologic Molecules... 

Some proteins contain covalent disulfide (S— S) bonds that link the sulfhydryl groups of cysteinyl residues. Formation of disulfide bonds involves oxidation of the cysteinyl sulfhydryl groups and requires oxygen. Intrapolypeptide disulfide bonds further enhance the stability of the folded conformation of a peptide, while interpolypeptide disulfide bonds stabilize the quaternary structure of certain oligomeric proteins. 

The effect of conjugation on bond stability is revealed by comparing 1,3-pentadiene and 1,4-pentadiene. Figure 10-43 shows that both have eight C—bonds, two C—C bonds, and two C C bonds. The only significant... 

The extrusion process frequently results in realignment of disulfide bonds and breakage of intramolecular bonds. Disulfide bonds stabilize the tertiary structure of protein and may limit protein imfolding during extrusion (Taylor et al., 2006). Flow and melt characteristics were improved when other proteins were extruded with disulfide reducing agents (Areas, 1992), which indicates that disulfide bonds adversely affect... 

Density functional theory study of aqueous-phase rate acceleration and endo/exo selectivity of the butadiene and acrolein Diels-Alder reaction72 shows that approximately 50% of the rate acceleration and endo/exo selectivity is attributed to hydrogen bonding and the remainder to bulk-phase effects, including enforced hydrophobic interactions and cosolvent effects. This appears to be supported by the experimental results of Engberts where a pseudothermodynamic analysis of the rate acceleration in water relative to 1-propanol and 1-propanol-water mixtures indicates that hydrogen-bond stabilization of the polarized activated complex and the decrease of the hydrophobic surface area of the reactants during the activation process are the two main causes of the rate enhancement in water.13... 

Note that by the investigators design, the bridgehead protons ( ) are not acidic, since any resulting carbanion would be orthogonal to the boron 2pz-orbital and thus incapable of 7r-bonding stabilization. 

The former structure contains an intramolecular H-bond within the host, which stabilizes its planar conformation, and an N-H. ..N link to the guest species. The other structure with acetic acid contains hydrogen-bond stabilized clusters of two hosts and two guests around the crystallographic inversion centers. A distortion of... 

A T structure with the strongest ct-donor D trans to the empty site (I in Scheme 1) is preferred in the case of three pure cr-donor ligands. The presence of a ir-acceptor ligand also makes the T structure more stable. When one of the ligands is a tt-donor, X, a Y structure of type II (Scheme 1) is observed. This structure permits the formation of a w bond between the empty metal d orbital and the lone pair of X. No such tt bond is present in the T structure since all symmetry adapted d orbitals are filled. This partial M—X multiple bond stabilizes Y over T. 

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