Stabilization by hydrogen bonding

Section 27 19 Two secondary structures of proteins are particularly prominent The pleated sheet is stabilized by hydrogen bonds between N—H and C=0 groups of adjacent chains The a helix is stabilized by hydrogen bonds within a single polypeptide chain... 

Figure 1.10 Helical conformations in polymer molecules, (a) A vinyl polymer with R substituents has three repeat units per turn, (b) The a helix of the protein molecule is stabilized by hydrogen bonding. [From R. B. Corey and L. Pauling,/ end. Inst. Lombardo Sci. 89 10 (1955).]...

Fig. 3. (a) Chemical stmcture of a synthetic cycHc peptide composed of an alternating sequence of D- and L-amino acids. The side chains of the amino acids have been chosen such that the peripheral functional groups of the dat rings are hydrophobic and allow insertion into Hpid bilayers, (b) Proposed stmcture of a self-assembled transmembrane pore comprised of hydrogen bonded cycHc peptides. The channel is stabilized by hydrogen bonds between the peptide backbones of the individual molecules. These synthetic pores have been demonstrated to form ion channels in Hpid bilayers (71). 

Fig. 1. The two principal elements of secondary stmcture in proteins, (a) The a-helix stabilized by hydrogen bonds between the backbone of residue i and i + 4. There are 3.6 residues per turn of helix and an axial translation of 150 pm per residue. represents the carbon connected to the amino acid side chain, R. (b) The P sheet showing the hydrogen bonding pattern between neighboring extended -strands. Successive residues along the chain point...

Figure 17.11 Structure of EMPl dimer from x-ray crystallography. In the presence of EBP, the EMPl peptide forms a dimer. Each monomer (shown in red and blue) forms a p hairpin structure stabilized by hydrogen bonds (red dashes) and a disulfide bond (yellow).

Figure 26.5 (a) The o-helical secondary structure of proteins is stabilized by hydrogen bonds between the N—H group of one residue and the C=0 group four residues away, (b) The structure of myoglobin, a globular protein with extensive helical regions that are shown as coiled ribbons in this representation. 

Cyclization of the diazo compounds 1 a or 1 b, obtained from 2,4,6-trimethylpyrylium tetra-fluoroborate and ethyl diazoacetate or dimethyl diazomethanephosphonate, respectively, thus gives 1//-1,2-diazepines 2, which are stabilized by hydrogen bonding.71... 

If 4-azidoquinolines with substituents such as a carbonyl group in position 2 or 8 are irradiated in the presence of sodium methoxide the resulting 1//-benzodiazepines 3 are stabilized by hydrogen bonding between the ring NH and a neighboring 2- or 9-acyl carbonyl group and are readily isolated.216,217... 

Water [579] is present in the structure of true crystalline hydrates [580] either as ligands co-ordinated with the cation (e.g. [Cu(OH2)4]2+ in CuS04 5 H20) or accommodated outside this co-ordination sphere within voids left in anion packing, further stabilized by hydrogen bonding (e.g. the remaining water molecule in CuS04 5 H20). 

Fig. 23.—(a) Stereo view of about two turns of the 2-fold helix of potassium galactoglucan (22). Each carboxylate group is bound to a potassium ion (crossed circle). The helix is stabilized by hydrogen bonds from the acetate and pyruvate groups to the main chain via water molecules (open circles). 

Fig. 39.—fa) Stereo view of two turns of the left-handed. 2-fold helix of E. coli capsular polysaccharide (46) stabilized by hydrogen bonds involving both main and side chains. The vertical line represents the helix axis. 

Collagen triple helices are stabilized by hydrogen bonds between residues in dijferent polypeptide chains. The hydroxyl groups of hydroxyprolyl residues also participate in interchain hydrogen bonding. Additional stability is provided by covalent cross-links formed between modified lysyl residues both within and between polypeptide chains. 

At first glance it may seem that like dissolves like does not apply here. Certainly, none of these complex molecules looks like water, and the resemblance to simple hydrocarbons such as cyclohexane also is remote. Keep in mind, however, that the basis for the principle is that similar compounds dissolve in each other because they have common patterns of intermolecular interactions. Example indicates that alcohols containing large nonpolar segments do not dissolve well in water. We can categorize vitamins similarly by the amounts of their stmctures that can be stabilized by hydrogen bonding to water molecules. 

The number of X-ray structures published since the publication of CHEC-II(1996) has increased, underlining the importance of this technique in structure elucidation. The structure of a number of 1,2,4-thiadiazoles and 1,2,4-thiadiazolidines has been determined by X-ray techniques and they are listed in Table 1. The first preparation of an A7-oxide derivative of a 1,2,4-thiadiazole 2 has been reported. The X-ray structure of compound 2 shows that it has a nearly planar ring this conformation is stabilized by hydrogen bonding with the carboxamide group <1999J(P1)2243>. 

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