Hybrid analyzers

Analyze hybridization pattern with respect to phylogeny... 

All of these trends can be accommodated by the orbital hybridization model The bond angles are characteristic for the sp sp and sp hybridization states of carbon and don t require additional comment The bond distances bond strengths and acidities are related to the s character m the orbitals used for bonding s Character is a simple concept being nothing more than the percentage of the hybrid orbital contributed by an s orbital Thus an sp orbital has one quarter s character and three quarters p an sp orbital has one third s and two thirds p and an sp orbital one half s and one half p We then use this information to analyze how various qualities of the hybrid orbital reflect those of its s and p contributors... 

For either the in-line or hybrid analyzers, the ions injected into the TOF section must all begin their flight down the TOF tube at the same instant if arrival times of ions at a detector are to be used to measure m/z values (see Chapter 26, TOF Ion Optics ). For the hybrid TOF instruments, the ion detector is usually a microchannel plate ion counter (see Chapter 30, Comparison of Multipoint Collectors (Detectors) of Ions Arrays and MicroChannel Plates ). 

This chapter provides brief descriptions of analyzer layouts for three hybrid instruments. More extensive treatments of sector/TOF (AutoSpec-TOF), liquid chromatography/TOF (LCT or LC/TOF with Z-spray), and quadrupole/TOF (Q/TOF), are provided in Chapters 23, 22, and 21, respectively. 

A TOF analyzer can be used alone or in conjunction with other analyzers to function as a hybrid mass spectrometer. The hybrids provide advantages not attainable, or difficult to attain by the... 

The term Q/TOF is used to describe a type of hybrid mass spectrometer system in which a quadrupole analyzer (Q) is used in conjunction with a time-of-flight analyzer (TOP). The use of two analyzers together (hybridized) provides distinct advantages that cannot be achieved by either analyzer individually. In the Q/TOF, the quadrupole is used in one of two modes to select the ions to be examined, and the TOF analyzer measures the actual mass spectrum. Hexapole assemblies are also used to help collimate the ion beams. The hybrid orthogonal Q/TOF instrument is illustrated in Figure 23.1. 

A single instrument — a hybrid of a quadrupole and a TOF analyzer — can measure a full mass spectrum of ions produced in an ion source. If these are molecular ions, their relative molecular mass is obtained. Alternatively, precursor ions can be selected for MS/MS to give a fragment-ion spectrum characteristic of the precursor ions chosen, which gives structural information about the original molecule. 

Commercial mass analyzers are based almost entirely on quadrupoles, magnetic sectors (with or without an added electric sector for high-resolution work), and time-of-flight (TOE) configurations or a combination of these. There are also ion traps and ion cyclotron resonance instruments. These are discussed as single use and combined (hybrid) use. 

TOF instruments have been hybridized with sector and quadrupole analyzers. These hybrid arrangements produce decided advantages over each technique alone. 

Hybrid time-of-flight (TOF) mass spectrometers make use of a TOF analyzer placed at right angles to a main ion beam. Ions are deflected from this beam by a pulsed electric fleld at right angles to the ion beam direction. The deflected ions travel down the TOF tube for analysis. Hybrid TOF mass spectrometers have many advantages arising from the combination of two techniques, neither of which alone would be as useful. 

Scanning techniques are carried out differently with such hybrid instruments as the triple quadrupole analyzer, the Q/TOF (quadrupole and time-of-flight), and double magnetic-sector instruments. 

Mass spectrometer configuration. Multianalyzer instruments should be named for the analyzers in the sequence in which they are traversed by the ion beam, where B is a magnetic analyzer, E is an electrostatic analyzer, Q is a quadrupole analyzer, TOP is a time-of-flight analyzer, and ICR is an ion cyclotron resonance analyzer. For example BE mass spectrometer (reversed-geometry double-focusing instrument), BQ mass spectrometer (hybrid sector and quadrupole instrument), EBQ (double-focusing instrument followed by a quadrupole). 

D Shalon, SJ Smith, PO Brown. A DNA microairay system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6 639-645, 1996. MB Eisen, PT Spellman, PO Brown, D Botstem. Cluster analysis and display of genomewide expression patterns. Proc Natl Acad Sci USA 95 14863-14868, 1998. 

Refers to the physical substrate to which biological samples are attached to create features (spots). In gene expression profiling arrays are hybridized with labeled sample and then scanned and analyzed to generate data. 

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