Analog reproducibility

Fig. 45. (a) Introduction of M(phen)31 complex into DNA oligomers, (b). Steady-state emission spectra of modified oligonucleotides in 0.01 m sodium phosphate buffer, pH 7.0, 0.1 NaCl. Top Ru(phen)3+-modified 20-mer duplex (solid line), a 1 1 mixture of non-comple-mentary Ru(phen)3+- and Os(phen)g+-modified 20-mers (- -) and a 20-mer duplex containing Ru(phen)g+ and Ps(phen)3+groups on different strands separated by one base pair (---). Bottom 20-mer duplex with 5 -terminal Rufphen) (solid line), and Ru(phen)jf/Os(phen)3 -containing analog (---). Reproduced with permission from Ref. (157). Copyright 1998, American Chemical Society. 

Scheme 5 Activity of pyridine analogs reproduced from Nicolaou et al. [47]...

Figure 5-2. Steady-state conduction in multiple slabs with electrical analog. (Reproduced with permission from reference 5. Copyright 1997, American Chemical Society.)...

The proof runs analogously to the original Longuet-Higgins one, and is not reproduced here. 

In 1888, Foerster (91), reproducing the same reaction with dianisyl-thiourea, demonstrated that the compound he obtained (59) could lose a sulfur atom by reduction with tin and hydrochloric acid to form a product analogous to N-phenylpiperidine (60). 

Quality Control. Reproducible production of perfumes requires careful quality control of all materials used as well as the compounding process itself. The use of analytical tools has iacreased over the years with their availability, but there can be no substitute for organoleptic evaluation. The human nose is far more sensitive than any analytical instmment for certain materials, yet it is also quite limited as a quantitative tool and is subject to fatigue. There are also weU-documented examples of specific anosmias ia iadividuals, ie, iaability to smell certain odor types, which is somewhat analogous to color-blindness. 

A dynamic transition in the internal motions of proteins is seen with increasing temperamre [22]. The basic elements of this transition are reproduced by MD simulation [23]. As the temperature is increased, a transition from harmonic to anharmonic motion is seen, evidenced by a rapid increase in the atomic mean-square displacements. Comparison of simulation with quasielastic neutron scattering experiment has led to an interpretation of the dynamics involved in terms of rigid-body motions of the side chain atoms, in a way analogous to that shown above for the X-ray diffuse scattering [24]. 

The choice of metal for a reduction depends upon the structure of the compound being reduced. For practical purposes the choice is between lithium and sodium since neither potassium nor calcium offer any advantages. Reductions with sodium require the use of iron-free reagents, but the author prefers to use iron-free reagents with lithium also, in order to ensure that reductions are reproducible. Lithium is required for the reduction of 5-methoxytetralin analogs and for the reduction of heavily alkylated rings such... 

In general there are few reproducible data on binding of reducible substrates to the isolated MoFe proteins. However, the S = EPR signal from the FeMoco centers of Kpl is pH dependent, the g values changing with a pKa of 8.7 (50). Of course, the proton is a substrate of nitrogenase however, there is no direct evidence for the proton associated with the pKa being bound directly to FeMoco. Nevertheless, this pKa can be perturbed by addition of the analog substrate acety-... 

Fig. 1 (a) Side and (b) top view of a parallel two-stranded coiled-coil based on heptad sequence repeat (abcdefg). Residues at positions a, d, e and g form the interface between a-helices in a coiled coil stmcture. Prime notations are used to distinguish analogous positions in the two helices fOT example, a and d are analogous positions. Reproduced from Fong et al. [73] licensee BioMed Central Ltd. copyright 2004 (http //genomebiology.eom/2004/5/2/Rll)... 

In the late 1940s zeolites were synthesized according to the procedure shown in Fig. 3.24. First an amorphous alumino-silicate gel is formed. This process is completely analogous to the production of alumina and silica gels described before. Subsequently this gel is crystallized into zeolite. The preparation of zeolites has drawn tremendous attention of the scientific and industrial community. A wide variety of zeolites have been synthesized, and reproducible synthesis procedures have been reported (often in the patent literature). Natural zeolites also exist massive deposits have been discovered in many places in the world. 

A close analogy exists between PCoA and PCA, the difference lying in the source of the data. In the former they appear as a square distance table, while in the latter they are defined as a rectangular measurement table. The result of PCoA also serves as a starting point for multidimensional scaling (MDS) which attempts to reproduce distances as closely as possible in a low-dimensional space. In this context PCoA is also referred to as classical metric scaling. In MDS, one minimizes the stress between observed and reconstructed distances, while in PCA one maximizes the variance reproduced by successive factors. 

Section 18.2). The latest generation of such catalysts (1 in Fig. 18.17) reproduces the key features of the site (i) the proximal imidazole ligation of the heme (ii) the trisi-midazole ligation of distal Cu (iii) the Fe-Cu separation and (iv) the distal phenol covalently attached to one of the imidazoles. As a result, binding of O2 to compound 1 in its reduced (Fe Cu ) state appears to result in rapid reduction of O2 to the level of oxides (—2 oxidation state) without the need for outer-sphere electron transfer steps [Collman et ah, 2007b]. This reactivity is analogous to that of the heme/Cu site of cytochrome c oxidase (see Section 18.2). 

Thus, we obtain a result analogous to the harmonic oscillator solution. The two independent solutions are infinite series, one in odd powers of fi and the other in even powers of fi. The case 5 = 0 gives both solutions, while the case s = 1 merely reproduces the odd series. These solutions are... 

An important addition to the model was the inclusion of virtual particles representative of lone pairs on hydrogen bond acceptors [60], Their inclusion was motivated by the inability of the atom-based electrostatic model to treat interactions with water as a function of orientation. By distributing the atomic charges on to lone pairs it was possible to reproduce QM interaction energies as a function of orientation. The addition of lone pairs may be considered analogous to the use of atomic dipoles on such atoms. In the model, the polarizability is still maintained on the parent atom. In addition, anisotropic atomic polarizability, as described in Eq. (9-28), is included on hydrogen bond acceptors [65], Its inclusion allows for reproduction of QM polarization response as a function of orientation around S, O and N atoms and it facilitates reproduction of QM interaction energies with ions as a function of orientation. 

The flow toward the surface is caused by the pressure under the indenter. It is analogous to the upward flow around a sphere dropped into a liquid. It is also analogous to inverse extrusion. A model of the flow has been proposed by Brown (2007) in terms of rotational slip. This model reproduces some of the observed behavior, but it is a continuum model and does not define the mechanism of rotational slip. 

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