Amino acid dehydrogenases NADPH

The vast majority of amino acid dehydrogenases use ammonium ions as the amine donor. However, recently a novel N-methyl-L-amino acid dehydrogenase (NMAADH), from Pseudomonas putida, was isolated and used to synthesize N-methyl-L-phenylalanine 36 from phenylpyruvic acid 31 and methylamine 35 in 98% yield and greater than 99%e.e. (Scheme 2.15). The enzyme was shown to accept a number of different ketoacids and also use various amine donors. Glucose dehydrogenase from Bacillus suhtilis was used to recycle the NADPH cofactor [17]. 

The synthesis of most amino acids demands NADPH so that efficient supply of this cofactor is highly relevant in production processes. In C. glutamicum, glucose 6-phosphate dehydrogenase, 6-phosphogluconate dehydrogenase, isocitrate... 

Enantiospecific reduction of C=N bonds is of interest for the synthesis of a-amino acids and derivatives such as amines. While nonenzymatic reductive amination has been known since 192711, only recently have enzymatic procedures to L-amino acids became established. The reduction can be achieved by different enzymes following different mechanisms, e.g. by pyridoxalphosphate (PLP)-dependent transaminases (E.C. 2.6.1, discussed in Chapter 12.7) or by amino acid dehydrogenases (E.C. 1.4.1) using NADH or NADPH as the cofactor. The synthetic usefulness of the transaminase reaction is diminished by the location of the equilibrium (Keq often is close... 

L-Lysine- -dehydrogenase (EC 1.4.1.15), an enzyme specific for the 4-pro-R hydrogen of NADPH (270), has been incubated with (2S,6R)- and (2S, 6S)-[6- H,]lysines 257a, Hc- = H, and 257a, H = H, respectively, and shown to be converted to A -piperideine-6-carboxyIate 265 with loss of the 6-pro-R hydrogen (271). The stereochemistry is very different from that exhibited by the e-aminotransferase, but it is in keeping with that of a D-amino acid dehydrogenase. 

Flavoproteins Yeast fatty acyl-CoA oxidase Porcine liver fatty acyl-CoA dehydrogenase Yeast glutathione reductase Egg-white flavoprotein Old yellow enzyme D-amino acid oxidase NADPH-cytochrome P-450 reductase Flavin Type of bonding between flavin and protein. Chemistry of charge-transfer complexes involving flavin and second ligand (e.g. phenolor amino-acid derivative )... 

Amino acids important in cofactor and catalysis in human 1 lb-hydroxysteroid dehydrogenase types 1 and 2. (a) 1 lb-HSD type 1. Preference of 1 lb-HSD type 1 for NADPH resides in lysine-44 and arginine-66, which have positively charged side chains that stabilize the binding of the 2 -phosphate on NADPH. These residues also counteract the repulsive interaction between glutamic acid 69 and the phosphate group,... 

Until recently, it was not known that flavoproteins contain also covalently bound phosphate. A. vinelandii flavodoxin, L-amino acid oxidase, glucose oxidase, NADPH-cytochrome c reductase, thiamine dehydrogenase possess one mole of covalently bound phosphate/per mole protein function of these phosphate residues... 

The four forms of hexokinase found in mammalian tissues are but one example of a common biological situation the same reaction catalyzed by two or more different molecular forms of an enzyme. These multiple forms, called isozymes or isoenzymes, may occur in the same species, in the same tissue, or even in the same cell. The different forms of the enzyme generally differ in kinetic or regulatory properties, in the cofactor they use (NADH or NADPH for dehydrogenase isozymes, for example), or in their subcellular distribution (soluble or membrane-bound). Isozymes may have similar, but not identical, amino acid sequences, and in many cases they clearly share a common evolutionary origin. 

Glutamate dehydrogenase catalyzes the reductive amination of the citric acid cycle intermediate a-ketoglutarate (Fig. 3a) (see Topic LI). Although the reaction is reversible, the reductant used in the biosynthetic reaction is NADPH. This enzyme is also involved in the catabolism of amino acids (see Topic M2). 

The crystal structures of the E. coli DHFR-methotrexate binary complex (Bolin et al., 1982), of the Lactobacillus casei (DHFR-NADPH-methotrexate ternary complex (Filman et al., 1982), of the human DHFR-folate binary complex (Oefner et al., 1988), and of the mouse (DHFR-NADPH-trimethoprim tertiary complex (Stammers et al., 1987) have been resolved at a resolution of 2 A or better. The crystal structures of the mouse DHFR-NADPH-methotrexate (Stammers et al., 1987) and the avian DHFR—phenyltriazine (Volz et al., 1982) complexes were determined at resolutions of 2.5 and 2.9 A, respectively. Recently, the crystal structure of the E. coli DHFR—NADP + binary and DHFR-NADP+-folate tertiary complexes were resolved at resolutions of 2.4 and 2.5 A, respectively (Bystroff et al., 1990). DHFR is therefore the first dehydrogenase system for which so many structures of different complexes have been resolved. Despite less than 30% homology between the amino acid sequences of the E. coli and the L. casei enzymes, the two backbone structures are similar. When the coordinates of 142 a-carbon atoms (out of 159) of E. coli DHFR are matched to equivalent carbons of the L. casei enzyme, the root-mean-square deviation is only 1.07 A (Bolin et al., 1982). Not only are the three-dimensional structures of DHFRs from different sources similar, but, as we shall see later, the overall kinetic schemes for E. coli (Fierke et al., 1987), L. casei (Andrews et al., 1989), and mouse (Thillet et al., 1990) DHFRs have been determined and are also similar. That the structural properties of DHFRs from different sources are very similar, in spite of the considerable differences in their sequences, suggests that in the absence, so far, of structural information for ADHFR it is possible to assume, at least as a first approximation, that the a-carbon chain of the halophilic enzyme will not deviate considerably from those of the nonhalophilic ones. 

Glutamate is synthesized from NH4 + and a-ketoglutarate, a citric acid cycle intermediate, by the action of glutamate dehydrogenase. We have already encountered this enzyme in the degradation of amino acids (Section 23.3.1). Recall that NAD+ is the oxidant in catabolism, whereas NADPH is the reductant in biosyntheses. Glutamate dehydrogenase is unusual in that it does not discriminate between NADH and NADPH, at least in some species. 

L-Phenylalanine,which is derived via the shikimic acid pathway,is an important precursor for aromatic aroma components. This amino acid can be transformed into phe-nylpyruvate by transamination and by subsequent decarboxylation to 2-phenylacetyl-CoA in an analogous reaction as discussed for leucine and valine. 2-Phenylacetyl-CoA is converted into esters of a variety of alcohols or reduced to 2-phenylethanol and transformed into 2-phenyl-ethyl esters. The end products of phenylalanine catabolism are fumaric acid and acetoacetate which are further metabolized by the TCA-cycle. Phenylalanine ammonia lyase converts the amino acid into cinnamic acid, the key intermediate of phenylpropanoid metabolism. By a series of enzymes (cinnamate-4-hydroxylase, p-coumarate 3-hydroxylase, catechol O-methyltransferase and ferulate 5-hydroxylase) cinnamic acid is transformed into p-couma-ric-, caffeic-, ferulic-, 5-hydroxyferulic- and sinapic acids,which act as precursors for flavor components and are important intermediates in the biosynthesis of fla-vonoides, lignins, etc. Reduction of cinnamic acids to aldehydes and alcohols by cinnamoyl-CoA NADPH-oxido-reductase and cinnamoyl-alcohol-dehydrogenase form important flavor compounds such as cinnamic aldehyde, cin-namyl alcohol and esters. Further reduction of cinnamyl alcohols lead to propenyl- and allylphenols such as... 

D-Amino acid oxidase occurs in peroxisomes containing other enzymes that produce H2O2 (e.g., L-a-hydroxy acid oxidase, citrate dehydrogenase, and L-amino acid oxidase) and catalase and peroxidase, which destroy H2O2. In leukocytes, killing of bacteria involves hydrolases of lysosomes and production of H2O2 by NADPH oxidase (Chapter 15). Conversion of D-amino acids to the corresponding a-keto acids removes the asymmetry at the a-carbon atom. The keto acids may be aminated to L-amino acids. By this conversion from D- to L-amino acids, the body utilizes D-amino acids derived from the diet ... 

Glutamate dehydrogenase A mitochondrial enzyme present in all tissues that metabolizes amino acids. It catalyzes the oxidative deamination of glutamate to a-ketoglutarate using NAD+ as the electron acceptor to also produce nicotinamide adenine dinucleotide (NADH) and ammonia. The enzyme uses the reducing equivalents of nicotinamide adenine dinucleotide phosphate (NADPH) to perform the reverse reaction. 

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