Turnover number of enzyme

Turnover numbers of enzymes vary from <1 to 106 s . Trypsin, chymotrypsin, and many intracellular... 

The turnover number of an enzyme, is a measure of its maximal catalytic activity, is defined as the number of substrate molecules converted into product per enzyme molecule per unit time when the enzyme is saturated with substrate. The turnover number is also referred to as the molecular activity of the enzyme. For the simple Michaelis-Menten reaction (14.9) under conditions of initial velocity measurements, Provided the concentration of... 

The turnover number of methylmalonyl-CoA epimerase is 100 sec and thus the enzyme enhances the reaction rate by a factor of 10. ... 

As an example, we mention the enzyme catalase, which catalyzes the decomposition of H2O2 to H2O and O2 at a turnover number of kcat = 10 and a high specificity constant of kcat/f M = 4 x 10 mol s . Such activities are orders of magnitude higher than those of heterogeneous catalysts. 

Different enzymes exhibit different specific activities and turnover numbers. The specific activity is a measure of enzyme purity and is defined as the number of enzyme units per milligram of protein. During the purification of an enzyme, the specific activity increases, and it reaches its maximum when the enzyme is in the pure state. The turnover number of an enzyme is the maximal number of moles of substrate hydrolyzed per mole of enzyme per unit time [63], For example, carbonic anhydrase, found in red blood cells, is a very active enzyme with a turnover number of 36 X 106/min per enzyme molecule. It catalyzes a very important reaction of reversible hydration of dissolved carbon dioxide in blood to form carbonic acid [57, p. 220],... 

Turnover numbers of molybdenum-containing enzymes generally tend to be low. A brief discussion of each of the enzymes in Table 1 is given below. 

The turnover number of an enzyme is defined as the maximum number of moles of substrate reacted per mole of enzyme (or molecules per molecule) per minute under optimum conditions (i.e., saturating substrate concentration, optimum pH, etc). If 2 mg/cm3 of a pure enzyme (50,000 molecular weight, Michaelis constant Km = 0.03 mole/m3) catalyzes a reaction at a rate of 2.5 jumoles/nUksec when the substrate concentration is 5 x 10 3 moles/m3, determine the turnover number corresponding to this definition and the actual number of moles of substrate reacting per minute per mole of enzyme. 

Enzymes associated with myelin. Several decades ago it was generally believed that myelin was an inert membrane that did not carry out any biochemical functions. More recently, however, a large number of enzymes have been discovered in myelin [37]. These findings imply that myelin is metabolically active in synthesis, processing and metabolic turnover of some of its own components. Additionally, it may play an active role in ion transport with respect not only to maintenance of its own structure but also to participation in ion buffering near the axon. 

Fe-hydrogenase, which usually functions in the direction of hydrogen evolution, has been known for over 30 years. This enzyme contains a highly reactive complex Fe-S center in which one of the Fe atoms is complexed with CO and CN [5], The Fe hydrogenases have extremely high turnover numbers 6,000 s 1 for C. pasteuriamm and 9,000 s 1 for Desulfovibrio spp. Note that this is a thousand times faster than the turnover number of nitrogenase ... 

Several approaches have been undertaken to construct redox active polymermodified electrodes containing such rhodium complexes as mediators. Beley [70] and Cosnier [71] used the electropolymerization of pyrrole-linked rhodium complexes for their fixation at the electrode surface. An effective system for the formation of 1,4-NADH from NAD+ applied a poly-Rh(terpy-py)2 + (terpy = terpyridine py = pyrrole) modified reticulated vitreous carbon electrode [70]. In the presence of liver alcohol dehydrogenase as production enzyme, cyclohexanone was transformed to cyclohexanol with a turnover number of 113 in 31 h. However, the current efficiency was rather small. The films which are obtained by electropolymerization of the pyrrole-linked rhodium complexes do not swell. Therefore, the reaction between the substrate, for example NAD+, and the reduced redox catalyst mostly takes place at the film/solution interface. To obtain a water-swellable film, which allows the easy penetration of the substrate into the film and thus renders the reaction layer larger, we used a different approach. Water-soluble copolymers of substituted vinylbipyridine rhodium complexes with N-vinylpyrrolidone, like 11 and 12, were synthesized chemically and then fixed to the surface of a graphite electrode by /-irradiation. The polymer films obtained swell very well in aqueous... 

Different from conventional chemical kinetics, the rates in biochemical reactions networks are usually saturable hyperbolic functions. For an increasing substrate concentration, the rate increases only up to a maximal rate Vm, determined by the turnover number fccat = k2 and the total amount of enzyme Ej. The turnover number ca( measures the number of catalytic events per seconds per enzyme, which can be more than 1000 substrate molecules per second for a large number of enzymes. The constant Km is a measure of the affinity of the enzyme for the substrate, and corresponds to the concentration of S at which the reaction rate equals half the maximal rate. For S most active sites are not occupied. For S >> Km, there is an excess of substrate, that is, the active sites of the enzymes are saturated with substrate. The ratio kc.AJ Km is a measure for the efficiency of an enzyme. In the extreme case, almost every collision between substrate and enzyme leads to product formation (low Km, high fccat). In this case the enzyme is limited by diffusion only, with an upper limit of cat /Km 108 — 109M. v 1. The ratio kc.MJKm can be used to test the rapid... 

There is huge potential in the combination of biocatalysis and electrochemistry through reaction engineering as the linker. An example is a continuous electrochemical enzyme membrane reactor that showed a total turnover number of 260 000 for the enantioselective peroxidase catalyzed oxidation of a thioether into its sulfone by in situ cathodic generated hydrogen peroxide - much higher than achieved by conventional methods [52],... 

Perhaps the only distinct advantage of enzymic catalysts is their (occasionally) very high turnover rate in situ. Thus, the molar activity (formerly called the turnover number) of some enzymes approaches 36,000,000/min/molecule (7). This latter number pertains to carbonic anhydrase C, the enzyme that converts C02 to HC03 . However, chemists do not need enzymes to convert COz to HCO3-, as long as we are not considering in vivo reactions. Since many enzymes have molar activities as low as 1150/min/molecule, we need not consider molar activities of 100 to 500 (for nonenzymic catalysts) as a severe handicap. It is evident that enzymes and nonenzymic chiral catalysts, rather than being competitors, complement one another. 

Unlike the whole-cell system, enzymatic reductions require the addition of a hydride donating cofactor to regenerate the reduced form of the enzyme. Depending on the chosen ADH, the cofactor is usually NADH or NADPH, both of which are prohibitively expensive for use in stoichiometric quantities at scale. Given the criticality of cofactor cost, numerous methods of in situ cofactor regeneration, both chemical and biocatalytic, have been investigated. However, only biocatalytic regeneration has so far proven to be sufficiently selective to provide the cofactor total turnover numbers of at least 10 required in production. 

Enzyme activity refers to the rate at which a particular enzyme catalyzes the conversion of a particular substrate (or substrates) to one or more products under a given set of conditions. Usually, activity refers to the contribution of many enzyme molecules (often expressed simply as activity per mg of protein or similar) but, in its simplest form, activity refers to the contribution of a single enzyme molecule. The turnover number of an enzyme-substrate combination refers to the number of substrate molecules metabolized in unit time (usually a period of 1 s) under a given set of conditions (see later). These definitions appear, at first glance, to be largely self-explanatory. However, many factors contribute to the final activity of an enzyme, and these must be considered during any assessment of such activity. 

The maximum rate is directly related to the rate at which the enzyme processes or permits conversion of the reactant molecule(s). The number of moles of reactants processed per mole of enzyme per second is called the turnover number. Turnover numbers vary widely. Some are high, such as for the scavenging of harmful free radicals by catalase, with a turnover number of about 40 million. Others are small, such as the hydrolysis of bacterial cell walls by the enzyme lysozyme, with a turnover number of about one half. 

In contrast to the AChR, AChE does not bind bungarotoxin or sulfhydryl reagents. It is inhibited by excess substrate (3 x I0 M), and the of electric eel AChE is about 10 M. The specific activity of the enzyme is one of the highest known 750 nmol/mg-hr, with a turnover time of 30-60 msec and a turnover number of 2-3 x 106. It is therefore one of the most efficient and fastest enzymes known. 

Regulation of enzymic activity occurs via two modes (cf. Ref. 50) alteration of the substrate binding process and/or alteration of the catalytic efficiency (turnover number) of the enzyme. The initial rate of a simple enzymatic reaction v is governed by the Michaelis-Menten equation... 

The principal limitation of these data is the lack of definition of the individual forms for the CYP2C subfamily. Analysis of this subfamily has remained problematic due to high cross-reactivities of all of the distinct forms with most antibody preparations. In addition, Western blot analysis does not distinguish between active and inactive forms of the protein. Furthermore, distinct enzymes may have different affinities for coenzymes necessary for catalytic activity, which will serve to unlink abundance of the protein and its catalytic activity. Therefore the assumptions must be made that the ratios of active to inactive protein are similar for all forms and that all forms have similar affinities for coenzymes. These assumptions may not be justified. However, even with these limitations, the study of Shimada et al. (1994) contributes greatly to our understanding of relative enzyme abundance in human liver. In addition, the relative abundance data, coupled with the absolute P450 content (per unit protein) and the turnover numbers for enzyme-specific substrates (per unit protein), can provide an estimate of the turnover number for individual enzymes in the human liver membrane environment. This provides an important benchmark for evaluation of turnover number data from cDNA-expressed enzymes. 

In those species, which are responsive (i.e., have a functioning receptor) such as the rat, treatment with drugs, which interact with the PPARa receptor such as clofibrate, will cause a number of effects, such as induction of a number of enzymes, increased cell growth and turnover, and liver tumors in almost all the animals as a direct result of interaction with the receptor and changes in gene transcription. This will be discussed in more detail in chapter 7. 

Before NMR spectroscopy and mass spectrometry revolutionized the structural elucidation of organic molecules, UV spectroscopy was an important technique and was used to identify the key chromophore of an unknown molecule. The importance of UV is much diminished nowadays, but it still retains its place in certain applications, such as the determination of kinetic parameters, (the Michaelis constant) and A cat (the turnover rate of an enzyme, in molecules per second), for a number of enzymic reactions and in the analysis of pharmaceuticals. 

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