Trans conformers

With all-atom simulations the locations of the hydrogen atoms are known and so the order parameters can be calculated directly. Another structural property of interest is the ratio of trans conformations to gauche conformations for the CH2—CH2 bonds in the hydrocarbon tail. The trans gauche ratio can be estimated using a variety of experimental techniques such as Raman, infrared and NMR spectroscopy. 

The trans conformation corresponds to a torsion angle of 180°, the gauche(+) conformation to oni + 60° and the gauche -) conformation to -60°. These approximately correspond to the torsion anj of the three minimum energy conformations of butane. 

Additional evidence for electron delocalization m 1 3 butadiene can be obtained by considering its conformations Overlap of the two rr electron systems is optimal when the four carbon atoms are coplanar Two conformations allow this coplananty they are called the s cis and s trans conformations... 

The letter sms cis and s trans refers to conformations around the C—C single bond m the diene The s trans conformation of 1 3 butadiene is 12 kJ/mol (2 8 kcal/mol) more stable than the s cis which is destabilized by van der Waals strain between the hydrogens at C 1 and C 4... 

FIGURE 10 6 Confor mations and electron delo calization in 1 3 butadiene The s CIS and the s trans con formations permit the 2p or bitalsto be aligned parallel to one another for maxi mum TT electron delocaliza tion The s trans conformation is more stable than the s CIS Stabilization resulting from tt electron de localization is least in the perpendicular conformation which IS a transition state for rotation about the C 2—C 3 single bond The green and yellow colors are meant to differentiate the orbitals and do not indicate their phases... 

The two most stable conformations of conjugated dienes are the s cis and s trans The s trans conformation is normally more stable than the s cis Both conformations are planar which allows the p orbitals to overlap to give an extended tt system... 

The potential energy shows a minimum at 0 = 0°, which is defined as the trans conformation. 

The potential energy shows secondary minima after rotation through 120°. These are called gauche conformations, and for polyethylene they are on the order of 4 kJ mol higher in energy than the trans conformation. 

We can use the law of cosines to estimate the effect on the end-to-end distance as follows. Picture two vectors of equal length b extending from the center of the chain to each of the ends. In the trans conformation of the center bond the... 

Individual chains are planar with alternating cis—trans conformation along the chain, and the interaction with neighboring chains leads to a highly ordered matrix. 

Dienes would be expected to adopt conformations in which the double bonds are coplanar, so as to permit effective orbital overlap and electron delocalization. The two alternative planar eonformations for 1,3-butadiene are referred to as s-trans and s-cis. In addition to the two planar conformations, there is a third conformation, referred to as the skew conformation, which is cisoid but not planar. Various types of studies have shown that the s-trans conformation is the most stable one for 1,3-butadiene. A small amount of one of the skew conformations is also present in equilibrium with the major conformer. The planar s-cis conformation incorporates a van der Waals repulsion between the hydrogens on C—1 and C—4. This is relieved in the skew conformation. 

The barrier for conversion of the skew conformation to the s-trans conformation is 3.9kcal/mol. This energy maximum presiunably refers to the conformation (transition state) in which the two n bonds are mutually perpendicular. Various MO calculations find the s-trans conformation to be 2-5 kcal/mol lower in energy than either the planar or skew cisoid conformations. Most high-level calculations favor the skew conformation over the planar s-cis, but the energy differences found are quite small. ... 

The case of a, -unsaturated caAonyl compounds is analogous to that of 1,3-dienes, in that stereoelectronic factors favor coplanaiity of the C=C—C=0 system. The rotamers that are important are the s-trans and s-cis conformations. Microwave data indicate that the s-trans form is the only conformation present in detectable amounts in acrolein (2-propenal). The equilibrium distribution of s-trans and s-cis conformations of a,fi-unsatuiated ketones depends on the extent of van der Waals interaction between substituents. Methyl vinyl ketone has minimal unfavorable van der Waals repulsions between substituents and exists predominantly as the s-trans conformer ... 

An unfavorable methyl-methyl interaction destabilizes the s-trans conformation of 4-methyl-3-penten-2-one relative to the s-cis conformation, and the equilibrium favors the s-cis form. 

Examine the models 1,3-butadiene in Figure 10.6 on/.earning By Modeling and compare space-filling models of the s-cis and s-trans conformation. 

In solution the cis and trans isomers may co-exist, as demonstrated by N NMR and UV-visible spectra. The N NMR chemical shift of the trans isomer is shifted ca. 60 ppm downfield relative to the cis isomer." The visible absorption band of S-nitrosothiols corresponds to a weak n K transition in the 520-590 nm region. The absorption maxima of trans conformers are red-shifted by ca. 30 nm relative to those of the cis isomer. Two absorptions are observed in the 520-590 nm region in the experimental spectra of RSNO derivatives." ... 

The only selenium diimide to be structurally characterized in the solid state, Se(NAd)2 (Ad = adamantyl), ° adopts the cis, trans conformation consistent with conclusions based on H and C NMR studies for Se(N Bu)2. ... 

The geometries and relative energies of the different conformations of model chalcogen diimides E(NR)2 (E = S, Se R = H, Me, Bu and SiMe3) have been investigated by using ab initio and DET molecular orbital methods.The cis,trans conformation is predicted to be most stable with the exception of the parent molecules E(NH)2 and the unsymmetrical systems RNSNH, for which the cis,cis conformation is slightly more stable than the cis, trans isomer. 

We ran an SCRF single point energy calculation for gauche dichloroethane conformers in cyclohexane (e=2.0), using the Onsager model at the Hartree-Fock and MP2 levels of theory (flfl=3.65) and using the IPCM model at the B3LYP level. The 6-31+G(d) basis set was used for all jobs. We also ran gas phase calculations for both conformations at the same model chemistries, and an IPCM calculation for the trans conformation (SCRF=Dipole calculations are not necessary for the trans conformation since it has no dipole moment). 

FIGURE 5.2 The peptide bond is shown in its usnal trans conformation of carbonyl O and amide H. The atoms are the oi-carbons of two adjacent amino acids joined in peptide linkage. The dimensions and angles are the average valnes observed by crystallographic analysis of amino acids and small peptides. The peptide bond is the light gray bond between C and N. (Adapted from Ramachandran, G. A., ct ai, 1974. Biochimica Biophysica Acta 359 298-302.)... 

NH2OH can exist as 2 configurational isomers (cis and trans) and in numerous intermediate gauche conformations as shown in Fig. 11.7. In the crystalline form, H bonding appears to favour packing in the trans conformation. The N-O distance is 147 pm consistent with its formulation as a single bond. Above room temperature the compound decomposes (sometimes explosively) by internal oxidation-reduction reactions into a complex mixture of N2, NH3, N2O and H2O. Aqueous solutions are much more stable, particularly acid solutions in which the compound... 

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