Structure, primary determining

The primary structure of a peptide is given by its ammo acid sequence plus any disulfide bonds between two cysteine residues The primary structure is determined by a systematic approach m which the protein is cleaved to smaller fragments even individual ammo acids The smaller fragments are sequenced and the mam sequence deduced by finding regions of overlap among the smaller peptides... 

Primary structure is determined, as we ve seen, by sequencing the pTotein. Secondary, tertiary, and quaternary structures are determined by X-ray crystallography (Chapter 22 Focus On) because it s not yet possible to predict computationally how a given protein sequence will fold. 

Proteins start out life as a bunch of amino acids linked together in a head-to-tail fashion—the primary sequence. The one-dimensional information contained in the primary amino acid sequence of cellular proteins is enough to guide a protein into its three-dimensional structure, to determine its specificity for interaction with other molecules, to determine its ability to function as an enzyme, and to set its stability and lifetime. 

Most of the unknown structures is determined from single crystal diffraction and refined from powder diffraction. Refinement is done with the Rietveld method, which is a least square fitting of the computed pattern to the measured one, while structure parameters are treated as the primary fitting parameters. This is in contrast to the procedure in pattern decomposition, which is outlined above (where not the structure parameters, but the peak intensities were the primary fitting parameters). Beside the... 

Although a protein s primary structure is determined by covalent bonds along the peptide backbone, the secondary and higher levels of structure depend in large part... 

The structure of proteins determines their function and can be described on four levels, illustrated on page 447. The primary structure is the sequence of amino acids in the polypeptide chain. The secondary structure describes how various short portions of a chain are either wrapped into a coil called an alpha helix or folded into a thin pleated sheet. The tertiary structure is the way in which an entire polypeptide chain may either twist into a long fiber or bend into a globular clump. The quaternary structure describes how separate proteins may join to form one larger complex. Each level of structure is determined by the level before it, which means that ultimately it is the sequence of amino acids that creates the overall protein shape. Fhis final shape is maintained both by chemical bonds and by weaker molecular attractions between amino acid side groups. 

The metal/ligand ratios in the complexes listed in Table 2 are obviously related to the proportions of vertices, edges and faces of the various metal polyhedra. The charges of the metals and ligands need not balance in these compounds. There is, however, another set of complexes (MX)f or (RMXR )p with no net charge, where the thermodynamics of solvation rather than symmetry might appear to be the primary determinant of composition and structure. In these cages the structure must adapt to the fixed M/X ratio. 

Visualizing Folded Protein Structures Primary Structure Determines Tertiary Structure Secondary Valence Forces Are the Glue That Holds Polypeptide Chains Together Domains Are Functional Units of Tertiary Structure Predicting Protein Tertiary Structure Quaternary Structure Involves the Interaction of Two or More Proteins... 

We began the discussion of globular protein tertiary structure by pointing out that the secondary and tertiary structure is determined by the primary structure and that this is probably a reflection of the fact that the native folded conformation is the most stable structure that can be formed. If this is so, then it should be possible to predict a protein s structure from its primary sequence. At this juncture, such predictions remain an elusive goal. However, most proteins are made of a limited number of domains, which tend to reappear in many different proteins. Since this is the case, it may be possible to predict the structures of many proteins in the future by using the information accumulated from x-ray diffraction studies of related proteins. 

Primary structure is the amino / ) acid sequence, which controls the shape of the protein and the role the protein serves in the body. Primary Structure Primary structure is the most fundamental of the four structural levels because it is the protein s amino acid sequence that determines its overall shape and function. So crucial is primary structure to function that the change of only one amino acid out of several hundred can drastically alter biological properties. The disease sickle-cell anemia, for example, is caused by a genetic defect in blood hemoglobin whereby valine is substituted for glutamic add at only one position in a chain of 146 amino acids. 

Altemaria altemata apple pathotype (previously described as A. mali Roberts) causes Altemaria blotch of susceptible apple cultivars through production of a cyclic peptide host-selective toxin, AM-toxin, whose complete structure has been determined for the first time among host-specific toxins.298 Disruption of AM-toxin synthetase (AMT) gene resulted in toxin-minus mutants, which were also unable to cause disease symptoms in susceptible apple cultivars, indicating that AMT is a primary determinant of virulence and specificity in the A. altemata apple pathotype309 (Figure 33). 

The sequence of amino acids in the long chain defines the primary structure of a protein. A secondary structure is determined when several residues, linked by hydrogen bonds, conform to a given combination (e.g., the a-helix, pleated sheet, and P-turns). Tertiary structure refers to the three-dimensional folded conformation of a protein. This is the biologically active conformation (crystal structure). A quaternary structure can result when two or more individual proteins assemble into two or more polypeptide chains. Conjugated proteins are complexes of proteins with other biomolecules, such as glycoproteins (sugar-proteins). 

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