Pyrimidine biosynthesis feedback inhibition

Aspartate transcarbamoylase (ATCase), the catalyst for the first reaction unique to pyrimidine biosynthesis (Figure 34-7), is feedback-inhibited by cytidine tri-... 

Purine and pyrimidine biosynthesis parallel one another mole for mole, suggesting coordinated control of their biosynthesis. Several sites of cross-regulation characterize purine and pyrimidine nucleotide biosynthesis. The PRPP synthase reaction (reaction 1, Figure 34-2), which forms a precursor essential for both processes, is feedback-inhibited by both purine and pyrimidine nucleotides. 

Pyrimidine Nucleotide Biosynthesis Is Regulated by Feedback Inhibition... 

In eukaryotes, carbamoyl phosphate synthase is inhibited by pyrimidine nucleotides and stimulated by purine nucleotides it appears to be the most important site of feedback inhibition of pyrimidine nucleotide biosynthesis in mammalian tissues. It has been suggested that under some conditions, orotate phosphoribosyltransferase may be a regulatory site as well. 

A plot of VQ against [S] for an allosteric enzyme gives a sigmoidal-shaped curve. Allosteric enzymes often have more than one active site which co-operatively bind substrate molecules, such that the binding of substrate at one active site induces a conformational change in the enzyme that alters the affinity of the other active sites for substrate. Allosteric enzymes are often multi-subunit proteins, with an active site on each subunit. In addition, allosteric enzymes may be controlled by effector molecules (activators or inhibitors) that bind to a site other than the active site and alter the rate of enzyme activity. Aspartate transcarbamoylase is an allosteric enzyme that catalyzes the committed step in pyrimidine biosynthesis. This enzyme consists of six catalytic subunits each with an active site and six regulatory subunits to which the allosteric effectors cytosine triphosphate (CTP) and ATP bind. Aspartate transcarbamoylase is feedback-inhibited by the end-product of the pathway, CTP, which acts as an allosteric inhibitor. In contrast, ATP an intermediate earlier in the pathway, acts as an allosteric activator. 

In this experiment we will examine some of the properties of the aspartate transcarbamylase of Escherichia coli, which is typical of many enzymes subject to feedback inhibition and which has been studied extensively. Aspartate transcarbamylase (ATCase) catalyzes the first reaction unique to the biosynthesis of pyrimidine nucleotides. ATCase is subject to specific inhibition by quite low concentrations of one of its end products, cytidine 5 -triphosphate (CTP). This relationship and two other regulatory interactions important to the control of pyrimidine biosynthesis are summarized in Figure 9-1. 

Nucleotide biosynthesis is regulated by feedback inhibition in a manner similar to the regulation of amino acid biosynthesis (Section 24,3). Indeed, aspartate transcarbamoylase, one of the key enzymes for the regulation of pyrimidine biosynthesis in bacteria, was described in detail in Chapter 10. Recall ihaiATCase is inhibited by CTP, the final product ofpyrimidine biosynthesis, and stimulated by ATP. Carbamoyl phosphate synthetase is a site of feedback inhibition in both prokaryotes and eukaryotes. 

Pyrimidine biosynthesis in E. coli is regulated by the feedback inhibition of aspartate transcarbamoylase, the enzyme that catalyzes the committed step. CTP inhibits and ATP stimulates this enzyme. The feedback inhibition of glutamine-PRPP amidotransferase by purine nucleotides is important in regulating their biosynthesis. 

The answer is c. (Murray, pp 375-401. Scriver, pp 2513-2570. Sack, pp 121-138. Wilson, pp 287-320.) The steps of pyrimicfine nucleotide biosynthesis are summarized in the figure below. The first step in pyrimidine synthesis is the formation of carbamoyl phosphate. The enzyme catalyzing this step, carbamoyl phosphate synthetase (1), is feedback-inhibited by UMP through allosteric effects on enzyme structure (not by competitive inhibition with its substrates). The enzyme of the second step, aspartate transcarbamoylase, is composed of catalytic and regulatory subunits. The regulatory subunit binds CTP or ATP TTP has no role in the feedback inhibition of pyrimidine synthesis. Decreased rather than increased activity of enzymes 1 and 2 would be produced by allosteric feedback inhibition. 

Pyrimidine Nucieotide Biosynthesis is Reguiated Feedback inhibition... 

Feedback inhibition in pyrimidine nucleotide biosynthesis takes place in several ways. GTP is an inhibitor of aspartate transcarbamoylase and of GTP synthetase. UMP is an inhibitor of an even earlier step, the one catalyzed by carbamoyl phosphate synthetase (Figure 23.29). 

Another form of spatial organization of metabolism that is often seen in eukaryotes but is less common in bacteria involves enzyme aggregates or multifunctional enzymes. An example is seen in S. cerevisiae where the first two reactions in pyrimidine nucleotide biosynthesis, the synthesis of carbamyl phosphate and the carbamylation of aspartate, are catalyzed by a single bifunctional protein (31). Both reactions are subject to feedback inhibition by UTP, in contrast to the situation inB. subtilis where aspartate transcarbamylase activity is not controlled. It is possible that an evolutionary advantage of the fusion of the genes... 

The suggestion of a control of pyrimidine synthesis stems from the observation that pyrimidine-requiring mutants of E. coli in pyrimidine-free medium accumulated carbamylaspartic acid and, to a lesser extent, dihy-droorotic acid and orotic acid this accumulation was prevented by the addition of uracil and cytosine to the medium (443). It was shown further employing enzyme preparations that cytidine and particularly cytidine 5 -phosphate were effective inhibitors of carbamylaspartic acid synthesis, suggesting that the inhibition of this enzyme by a pyrimidine nucleotide was the mechanism for the feedback control of pyrimidine biosynthesis in bacteria. The decreased formation of dihydroorotic acid and orotic acid were probably secondary events reflecting the earlier metabolic block. 

The operation of the feedback mechanism in the cell can be described in the following manner if nucleic acid syntheris were proceeding at a rapid rate, the concentration of nucleotides in the cell, e.g. CMP, would decrease, relieve aspartate-carbamyl transferase (also called carbamyl-aspartic acid synthetase) reaction of any inhibition, and thus permit an increased rate of pyrimidine biosyntheris. If nucleic acid syntheris were slowed or halted, the CMP concentration would rise, inhibit the enzyme, and thereby decelerate pyrimidine biosynthesis. 

The role of the end products of a metabolic pathway in regulating their own biosynthesis was first demonstrated by Roberts et al. (1955). Working with E. co/z, they showed that amino acid synthesis from glucose is inhibited by the addition of amino acids to the incubation medium. Umbarger (1956) demonstrated that end products may inhibit the activity of enzymes mediating end-product synthesis. Often this inhibition is exerted on the first enzyme of the metabolic sequence. End products may also inhibit enzyme synthesis itself, as is frequently observed in anabolic pathways for amino acids, purines, and pyrimidines. This latter mode of metabolic regulation is termed repression and may occur independently of feedback inhibition. Both mechanisms may be involved in regulation of the same biosynthetic pathway. However, unlike feedback inhibition, which provides very rapid control, repression is a relatively slow process which permits adjustment of metabolism over an extended period of time. 

Bourget, P. A., and Tremblay, G. C., 1972, Control of pyrimidine biosynthesis in rat liver by feedback inhibition of aspartate carbamyltransferase, Biochem. Biophys. Res. Com-mun. 46 752. 

Carbamyl-L-aspartate is the key precursor in the biosynthesis of pyrimidines. The enzyme aspartate transcarbamylase is inhibited by several pyrimidine nucleotides, notably cytidine triphosphate, and is activated by ATP, a purine nucleotide. Thus the enzyme is under feedback regulation, and controls the relative concentration of pyrimidine and purine nucleotides. 

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