Proteins electron donor protein

Anandatheerthavarada HK, Amuthan G, Biswas G, Robin MA, Murali R, et al. 2001. Evolutionarily divergent electron donor proteins interact with P450MT2 through the same helical domain but different contact points. EMBO J 20 2394-2403. 

The principal function of cyt. c is to form complexes through a defined interface with protein partners in our cells. This is most established for eukaryotic cytochrome c within the mitochondrial electron transport chain (ETC), a process required for carrying out the oxidative phosphorylation of ATP.4 Formation of a complex with cyt. c reductase (an electron-donor protein from complex III) and cyt. c oxidase (an electron-acceptor protein from complex IV) leads to the transfer of electrons between otherwise separated proteins. More recently cyt. c has been found to play a critical role in the process of apoptosis or programmed cell death This in turn has led to a resurgence of interest in all aspects of cyt. c research.5 Again protein-protein interactions have been shown be essential with mitochrondrial cyt. c binding to such proteins as APAF-1 to form the multi-protein species known as the apoptosome that is now thought to be a requirement for apoptosis.6,7... 

Figure 5 The multistep conversion of heme to a-biliverdin catalyzed by heme oxygenase. The electrons from NADPH are transferred to heme oxygenase by cytochrome P4S0 reductase or other electron donor proteins.

A salient feature of natural surfaces is tliat tliey are overwhelmingly electron donors [133]. This is tlie basis for tlie ubiquitous hydrophilic repulsion which ensures tliat a cell can function, since massive protein-protein aggregation and protein-membrane adsorjition is tliereby prevented. In fact, for biomolecule interactions under typical physiological conditions, i.e. aqueous solutions of moderately high ionic strengtli, tlie donor-acceptor energy dominates. 

Iron Sulfur Compounds. Many molecular compounds (18—20) are known in which iron is tetrahedraHy coordinated by a combination of thiolate and sulfide donors. Of the 10 or more stmcturaHy characterized classes of Fe—S compounds, the four shown in Figure 1 are known to occur in proteins. The mononuclear iron site REPLACE occurs in the one-iron bacterial electron-transfer protein mbredoxin. The [2Fe—2S] (10) and [4Fe—4S] (12) cubane stmctures are found in the 2-, 4-, and 8-iron ferredoxins, which are also electron-transfer proteins. The [3Fe—4S] voided cubane stmcture (11) has been found in some ferredoxins and in the inactive form of aconitase, the enzyme which catalyzes the stereospecific hydration—rehydration of citrate to isocitrate in the Krebs cycle. In addition, enzymes are known that contain either other types of iron sulfur clusters or iron sulfur clusters that include other metals. Examples include nitrogenase, which reduces N2 to NH at a MoFe Sg homocitrate cluster carbon monoxide dehydrogenase, which assembles acetyl-coenzyme A (acetyl-CoA) at a FeNiS site and hydrogenases, which catalyze the reversible reduction of protons to hydrogen gas. 

The properties of electron transfer proteins that are discussed here specifically affect the electron transfer reaction and not the association or binding of the reactants. A brief overview of these properties is given here more detailed discussions may be found elsewhere (e.g.. Ref. 1). The process of electron transfer is a very simple chemical reaction, i.e., the transfer of an electron from the donor redox site to the acceptor redox site. 

The second step involves the transfer of electrons from the reduced [FMNHg] to a series of Fe-S proteins, including both 2Fe-2S and 4Fe-4S clusters (see Figures 20.8 and 20.16). The unique redox properties of the flavin group of FMN are probably important here. NADH is a two-electron donor, whereas the Fe-S proteins are one-electron transfer agents. The flavin of FMN has three redox states—the oxidized, semiquinone, and reduced states. It can act as either a one-electron or a two-electron transfer agent and may serve as a critical link between NADH and the Fe-S proteins. 

The immediate electron acceptor for P700 is a special molecule of chlorophyll. This unique Chi a (Aq) rapidly passes the electron to a specialized quinone (Aj), which in turn passes the e to the first in a series of membrane-bound ferredoxins (Fd, Chapter 21). This Fd series ends with a soluble form of ferredoxin, Fd, which serves as the immediate electron donor to the fiavo-protein (Fp) that catalyzes NADP reduction, namely, ferredoxin NADP reductase. 

Further improvements can be achieved by replacing the oxygen with a non-physiological (synthetic) electron acceptor, which is able to shuttle electrons from the flavin redox center of the enzyme to the surface of the working electrode. Glucose oxidase (and other oxidoreductase enzymes) do not directly transfer electrons to conventional electrodes because their redox center is surroimded by a thick protein layer. This insulating shell introduces a spatial separation of the electron donor-acceptor pair, and hence an intrinsic barrier to direct electron transfer, in accordance with the distance dependence of the electron transfer rate (11) ... 

Mr 220-250 kDa. Figure 1 shows an overall electron transfer pathway for the nitrogenases where the Fe proteins act as very specific, essential electron donors to the larger proteins. This is not the only role for the Fe proteins (see Section IV,C) and their role in the mechanism is almost certainly more complex than that of a simple electron transfer agent (see below. Section V). Electron transfer from the Fe protein to... 

A comprehensive description of the mechanism of molybdenum nitrogenase has been provided by the Lowe-Thorneley scheme 102) (Figs. 8 and 9). In this scheme the Fe protein (with MgATP) functions as a single electron donor to the MoFe protein in the Fe protein cycle (Fig. 8), which is broken down into four discrete steps, each of which may be a composite of several reactions ... 

Some aspects of the Lowe-Thomeley mechanism for nitrogenase action, which has served us well over the past 15 years, are being called into question. In particular, the necessity for protein-protein dissociation after each electron transfer, the rate-determining step with dithionite as reductant, is being questioned when the natural electron donor flavodoxin or other artificial systems are used. Some aspects of the mechanism should be reinvestigated. 

Fig. 11. Active sites and reactions of the bifunctional CODH/ACS. For synthesis of acetyl-CoA, two electrons are transferred from external electron donors to Cluster B of the CODH subunit. Electrons are relayed to Cluster C which reduces CO2 to CO. The CO is proposed to be channeled to Cluster A of the ACS subunit to form a metal-CO adduct that combines with the methyl group of the CFeSP and CoA to form acetyl-CoA. For utilization of acetyl-CoA, these reactions are reversed. The abbreviations are CODH, CO dehydrogenase ACS, acetyl-CoA synthase CFeSP, the corrinoid iron-sulfur protein CoA, Coenzyme A.

It has always been assumed that these simple proteins act as electron-transfer proteins. This is also a fair conclusion if we take in account that different proteins were isolated in which the Fe(RS)4 center is in association with other non-heme, non-iron-sulfur centers. In these proteins the Fe(RS)4 center may serve as electron donor/ac-ceptor to the catalytic site, as in other iron-sulfur proteins where [2Fe-2S], [3Fe-4S], and [4Fe-4S] clusters are proposed to be involved in the intramolecular electron transfer pathway (see the following examples). 

All characterized BVMOs contain a flavin cofactor that is crucial for catalysis while NADH or NADPH is needed as electron donor. An interesting observation is the fact that most reported BVMOs are soluble proteins. This is in contrast to many other monooxygenase systems that often are found to be membrane-bound or membrane-associated. In 1997, Willetts concluded from careful inspection of... 

Breese K, G Fuchs (1998) 4-hydroxybenzoyl-CoA reductase (dehydroxylating) from the denitrifying bacterium Thauera aromatica prosthetic groups, electron donor, and genes of a member of the molybdenum-flavin-iron-sulfur proteins. Eur J Biochem 251 916-923. 

Bogdanov AM, Mishin AS, Yampolsky IV, Belousov VV, Chudakov DM, Subach FV, Verkhusha VV, Lukyanov S, Lukyanov KA (2009) Green fluorescent proteins are light-induced electron donors. Nat Chem Biol 5 459 161... 

Fds with conventional [Fe2-S2] clusters can undergo a one-electron transfer to a deeply valence-trapped FemFen species. For proteins of known structure (and presumably others) one iron atom is closer to the surface (by about 0.5 nm) and it has been established that the added electron resides on that atom. No instances are known where an [Fe2-S2] centre acts as a physiological two-electron donor or acceptor. In addition to the conventional [Fe2-S2] ferredoxins, the electron-transfer chains of mitochondria and photosynthetic bacteria contain Rieske proteins which have a cluster with the composition [(Cys.S)2FeS2Fe(N.His)2], in which the two imidazole groups are bound to the same iron atom (Figure 2.9). This atom is the site... 

There is some evidence that the iron-sulfur protein, FhuF, participates in the mobilization of iron from hydroxamate siderophores in E. coli (Muller et ah, 1998 Hantke, K. unpublished observations). However, a reductase activity of FhuF has not been demonstrated. Many siderophore-iron reductases have been shown to be active in vitro and some have been purified. The characterization of these reductases has revealed them to be flavin reductases which obtain the electrons for flavin reduction from NAD(P)H, and whose main functions are in areas other than reduction of ferric iron (e.g. flavin reductase Fre, sulfite reductase). To date, no specialized siderophore-iron reductases have been identified. It has been suggested that the reduced flavins from flavin oxidoreductases are the electron donors for ferric iron reduction (Fontecave et ah, 1994). Recently it has been shown, after a fruitless search for a reducing enzyme, that reduction of Co3+ in cobalamin is achieved by reduced flavin. Also in this case it was suggested that cobalamins and corrinoids are reduced in vivo by flavins which may be generated by the flavin... 

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