Protein with translation initiators

Tarun, S. J. J., and Sachs, A. B. (1996). Association of the yeast poly(A) tail binding protein with translation initiation factor eIF4G. EMBOJ. 15, 7168—7177. 

Fig. 1.57. Model of the regulation of translation by insulin. Insulin ( and other growth factors) activates the Akt kinase pathway (see ch. 10), whose final result is the phosphorylation of 4E-BPl, a regulatory protein of translation initiation. The 4E-BP1 protein inactivates the initation factor eIF-4E by complex formation. eIE-4E is required, together with the proteins eIE-4A and p220, for the binding of the 40S subunit of the ribosome to the cap structure of the mRNA. If the 4E-BP1 protein becomes phosphorylated as a result of insulin-mediated activation of the PI3 kinase/Akt kinase cascade, then eIE-4E is liberated from the inactive eIP-4E 4E-BPl complex and protein biosynthesis can begin.

Fontaine-Rodriguez, E.C., Taylor, T.J., Olesky, M. and Knipe, D.M., Proteomics of herpes simplex virus infected cell protein 27 association with translation initiation factors. Virology, 330, 487 92 (2004). 

Efforts to identify the inhibitory component in infected cell ribosomal salt wash yielded a protein of Mr 33,0(X) daltons, which comigrated with the SFV capsid protein on SDS-polyacrylamide gels and which reacted with antibodies raised against viral capsid protein (H. Van Steeg, personal communication). This protein, purified from infected cell ribosomal salt wash, selectively inhibited translation in vitro of host and early viral mRNA, but had no effect on translation of late viral mRNA or EMC virus RNA. The mechanism by which SFV capsid protein interferes with translation initiation of some mRNAs is not understood, nor is it clear how SFV late mRNA eludes the inhibition, or what role cap recognition plays in this scheme. However, the overall strategies followed by SFV and poliovirus may be quite similar, despite differences in underlying mechanisms. 

The rapid repression of pre-existing protein synthesis caused by anaerobic treatment is correlated with a near complete dissociation of polysomes in primary roots of soybeans (Lin Key, 1967) and maize (E.S. Dennis and A.J. Pryor, personal communication). This does not result from degradation of aerobic mRNAs, because the mRNAs encoding the pre-existing proteins remain translatable in an in vitro system at least five hours after anaerobic treatment is initiated (Sachs et al., 1980). This is in agreement... 

Recently, the related phenomenon of RNA interference (RNAi) has attracted much attention [5]. RNAi occurs when a short (generally 21 nucleotides in length) double-stranded RNA (dsRNA) catalyticaUy represses the translation of a fully complementary mRNA sequence. The process appears to proceed via a complex formed between the antisense RNA strand and a protein with RNase activity [6]. Upon binding to the target mRNA sequence, the ribonucleoprotein complex initiates cleavage of the mRNA transcript thus preventing translation of intact protein. After dissociation from the truncated mRNAs, the ribonucleoprotein complex is free to act on other intact mRNAs. Such small interfering RNAs (siRNAs) have... 

In contrast to most mRNAs, which become untranslatable after a temperature downshock, cold shock mRNAs possess a mechanism to form the translation initiation complex at low temperature without cold shock ribosomes. A close inspection of the mRNAs of class I cold shock proteins reveal that they are equipped with an extra ribosome-binding site called the downstream box located within the coding region of their transcript [130]. It would be interesting to know whether introduction of this downstream box into a cellular mRNA would convert it into a transcript which can be transcribed immediately after a cold shock. In the case of the cspA mRNA it has been shown that in the absence of the downstream box the initiation complex cannot be formed at low temperature during the accHmation phase [131]. 

The activity of 4E is regulated in a second way, and this also involves phosphorylation. A recently discovered set of proteins bind to and inactivate 4E. These proteins include 4E-BP1 (BPl, also known as PHAS-1) and the closely related proteins 4E-BP2 and 4E-BP3. BPl binds with high affinity to 4E. The [4E] [BP1] association prevents 4E from binding to 4G (to form 4F). Since this interaction is essential for the binding of 4F to the ribosomal 40S subunit and for correctly positioning this on the capped mRNA, BP-1 effectively inhibits translation initiation. 

The discovery of Green Fluorescent Protein (GFP) and the development of technology that allows specific proteins to be tagged with GFP has fundamentally altered the types of question that can be asked using cell biological methods. It is now possible not only to study where a protein is within a cell, but also feasible to study the precise dynamics of protein movement within living cells. We have exploited these technical developments and applied them to the study of translation initiation factors in yeast, focusing particularly on the... 

This chapter presents methods and protocols suitable for the identification and characterization of inhibitors of the prokaryotic and/or eukaryotic translational apparatus as a whole or targeting specific, underexploited targets of the bacterial protein synthetic machinery such as translation initiation and amino-acylation. Some of the methods described have been used successfully for the high-throughput screening of libraries of natural or synthetic compounds and make use of model universal mRNAs that can be translated with similar efficiency by cellfree extracts of bacterial, yeast, and HeLa cells. Other methods presented here are suitable for secondary screening tests aimed at identifying a ... 

Lamphear, B. J., Kirchweger, R., Skem, T., and Rhoads, R. E. (1995). Mapping of functional domains in eukaryotic protein synthesis initiation factor 4G (eIF4G) with picornaviral proteases. Implications for cap-dependent and cap-independent translational initiation. J. Biol. Chem. 270, 21975—21983. 

Hunt, S. L., Hsuan, J. J., Totty, N., and Jackson, R. J. (1999). Unr, a cellular cytoplasmic RNA-binding protein with five cold-shock domains, is required for internal initiation of translation of human rhinovirus RNA. Genes Dev. 13, 437—448. 

After attachment of amino acids to tRNA, the amino acids are assembled beginning with the amino terminus and proceeding in the direction of the carboxy terminus. The ribosome is the machinery that translates the mRNA into protein. The ribosome is a very complex protein that contains ribosomal RNA as a functional and structural component. The ribosome assembles around the mRNA, and the cap and other signals allow alignment of the mRNA into the correct position. The initial assembly of the mRNA into the ribosome requires association of the small ribosomal subunit with an initiator tRNA (Met or fMet). Small is a misstatement, because the small ribosomal subunit is a large, complex assembly of numerous smaller proteins—it s just smaller than the... 

Gribskov, M. (1992). Translational initiation factors IF-1 and eIF-2 alpha share an RNA-binding motif with prokaryotic ribosomal protein SI and polynucleotide phosphoryl-ase. Gene 119, 107-111. 

The CSN3 subunit interacts with IKKy, a component of the IsrB-kinase complex controlling NF-kB activity [32]. Additionally, it is the binding site for the CSN-associated kinases CK2 and PKD [31]. The subunit of the translation-initiation factor 3 complex, Int6/eIF3e, and the ubiquitin-conjugating enzyme variant, COPIO, have been identified as other cellular interactors [33, 34]. Also the HIV-1 Tat protein interacts with CSN 3 (our unpublished data). 

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