Protein-lipid interactions atomic structure

The intracellular and plasma membranes have a complex structure. The main components of a membrane are lipids (or phospholipids) and different proteins. Lipids are fatlike substances representing the esters of one di- or trivalent alcohol and two aliphatic fatty acid molecules (with 14 to 24 carbon atoms). In phospholipids, phosphoric acid residues, -0-P0(0 )-O-, are located close to the ester links, -C0-0-. The lipid or phospholipid molecules have the form of a compact polar head (the ester and phosphate groups) and two parallel, long nonpolar tails (the hydrocarbon chains of the fatty acids). The polar head is hydrophihc and readily interacts with water the hydrocarbon tails to the... 

Several interesting review articles have been recently published focusing on the use of NMR methods to study peptide-lipid and small molecular weight molecule interactions in model and natural membranes. Maler as well as Kang and Li highlighted the unique possibilities of solution-state NMR to investigate the structure, dynamics and location of proteins and peptides in artificial bilayers and peptide-lipid interactions. On the other hand, Renault et reviewed recent advances in cellular solid-state nuclear magnetic resonance spectroscopy (SSNMR) to follow the structure, function, and molecular interactions of protein-lipid complexes in their cellular context and at atomic resolution. 

When the alkane chains are much longer than the one shown in Example 11.2, it becomes much easier to find conformations that keep the atoms far enough away from one another to avoid severe steric repulsions while lowering the energy by virtue of Coulomb and van der Waals interactions. Such structures are central to the function of nucleic acids, proteins, and lipids. 

Biological membranes provide the essential barrier between cells and the organelles of which cells are composed. Cellular membranes are complicated extensive biomolecular sheetlike structures, mostly fonned by lipid molecules held together by cooperative nonco-valent interactions. A membrane is not a static structure, but rather a complex dynamical two-dimensional liquid crystalline fluid mosaic of oriented proteins and lipids. A number of experimental approaches can be used to investigate and characterize biological membranes. However, the complexity of membranes is such that experimental data remain very difficult to interpret at the microscopic level. In recent years, computational studies of membranes based on detailed atomic models, as summarized in Chapter 21, have greatly increased the ability to interpret experimental data, yielding a much-improved picture of the structure and dynamics of lipid bilayers and the relationship of those properties to membrane function [21]. 

Artificial membranes are used to study the influence of drug structure and of membrane composition on drug-membrane interactions. Artificial membranes that simulate mammalian membranes can easily be prepared because of the readiness of phospholipids to form lipid bilayers spontaneously. They have a strong tendency to self-associate in water. The macroscopic structure of dispersions of phospholipids depends on the type of lipids and on the water content. The structure and properties of self-assembled phospholipids in excess water have been described [74], and the mechanism of vesicle (synonym for liposome) formation has been reviewed [75]. While the individual components of membranes, proteins and lipids, are made up of atoms and covalent bonds, their association with each other to produce membrane structures is governed largely by hydrophobic effects. The hydrophobic effect is derived from the structure of water and the interaction of other components with the water structure. Because of their enormous hydrogen-bonding capacity, water molecules adopt a structure in both the liquid and solid state. 

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