Protein encoding

In enteric bacteria, expression of the nif genes is under general nitrogen regulation by the ntr system. This system consists of essentially a sensor-activator pair of proteins, encoded by ntrB and ntr(d. When fixed nitrogen is limiting, the sensor, NtrB, phosphorylates (and so activates) the activator,... 

In apoptotic cell death, several factors such as growth factors, NO, the tumor suppressor gene p53, and the protein encoded by this gene contribute to the process that leads to cell death. One of the functions of p53 protein is the activation of apoptosis if a cell is transformed to a malignant cell. Apoptosis typically leads to the formation of smaller membrane-encapsulated particles within the cell. Apoptotic cell death begins in the nucleus and proceeds to other parts of the cell. The death process may be quite advanced before it can... 

Each such segment of encoded information defines a gene, and expression of the gene leads to synthesis of the specific protein encoded by it, endowing the cell with the functions unique to that particular protein. Proteins are the agents of biological function they are also the expressions of genetic information. 

Expression vectors are engineered so that any cloned insert can be transcribed into RNA, and, in many instances, even translated into protein. cDNA expression libraries can be constructed in specially designed vectors derived from either plasmids or bacteriophage A. Proteins encoded by the various cDNA clones within such expression libraries can be synthesized in the host cells, and if suitable assays are available to identify a particular protein, its corresponding cDNA clone can be identified and isolated. Expression vectors designed for RNA expression or protein expression, or both, are available. 

HVA calcium channels are biochemically hetero-oligomeric complexes of five proteins encoded by four gene families (Fig. 1) The ax subunits of 190-250 kDa contain the voltage-sensor, the selectivity filter, the ion-conducting pore, the binding sites for most calcium... 

Mitochondrial DNA is transcribed as a polycistronic RNA which is subsequently cleaved to generate the various mature mRNA, tRNA, and rRNA (Clayton, 1984). The 13 proteins encoded by mtDNA are all components of the respiratory chain and are seven subunits of complex I, one subunit of complex III, three subunits of complex IV, and two subunits of complex V. 

The biosynthesis of the MoFe protein is extremely complex. Here we will first describe the biosynthesis of FeMoco, then that of the apo-MoFe protein, encoded by the nifD and nifK genes and containing the P clusters, and finally we will summarize what is known about the combination of FeMoco with the apo-MoFe protein to form active MoFe protein. 

The functions of a large proportion of the proteins encoded by the human genome are presently unknown. Recent advances in bioinformatics permit researchers to compare amino acid sequences to discover clues to potential properties, physiologic roles, and mechanisms of action of proteins. Algorithms exploit the tendency of nature to employ variations of a structural theme to perform similar functions in several proteins (eg, the Rossmarm nucleotide binding fold to bind NAD(P)H,... 

Figure 37-14. Alternative promoter use in the liver and pancreatic B cell glucokinase genes. Differential regulation of the glucokinase GK) gene is accomplished by the use of tissue-specific promoters. The B cell GK gene promoter and exon 1B are located about 30 kbp upstream from the liver promoter and exon 1L. Each promoter has a unique structure and is regulated differently. Exons 2-10 are identical in the two genes, and the GK proteins encoded by the liver and B cell mRNAs have identical kinetic properties.

Disorders of mitochondrial oxidative phosphorylation Proteins encoded by mitochondrial genes Proteins encoded by nuclear genes... 

The results of the two dtafts are rich in information about protein famihes and classes. One example is shown in Table 54—3, in which the major classes of proteins encoded by human genes are listed. As can be seen, the latgest class is unknown. Identification of these unknown ptoteins will be a major focus of activity for many laboratories. 

Table 54-3. Major classes of proteins encoded by human genes. ...

Proteomics (see Chapter 4) in its broadest sense is the study of all the proteins encoded in an organism (ie. 

When the Arabidopsis Expressed Sequence Tag (EST) Database was searched with the tomato fmit Psubunit protein sequence two related cDNAs were identified (Figure 11). cDNA 2 is near full length and has been completely sequenced, cDNA 1 has also been sequenced but currently lacks approximately 100 amino acids of coding region. The two Arabidopsis cDNAs are 81% identical at the protein level and have lower identity to the protein encoded by tomato gene 1, 64 and 63% for cDNA 1 and cDNA 2, respectively. However, both cDNAs encode... 

Next, Reilly et al. [65] localized the Na /H exchanger gene product in renal epithelial cells where the distributions of the kinetic isoforms was well-established. The strategy was based on the observation that the resistant- and sensitive-types are restricted to the apical and basolateral membranes, respectively, in confluent LLC-PK]/Clone 4 cells [8]. Thus, if proteins encoded by the cloned cDNAs localized to the apical membrane this would indicate that they represent the resistant-type. Localization to the basolateral membrane would prove they were the sensitive-type and presence on both membranes would suggest that the two functional isoforms had identical primary structures. Na exchanger proteins were localized by... 

This chapter s brief review has already described some mechanisms from which the diversity of K channel function, as evident at the level of biophysical and pharmacological studies, may arise. The multiplicity of different channel protein encod-... 

---