Analysis phylogenetic

Phylogenetic analysis is the means of inferring or estimating evolutionary relationships. Nucleotide sequences of DNA or RNA and amino acid sequences of proteins are the most popular data used to construct phylogenetic trees. Methods of phylogenetic analysis using sequence data are introduced and performed with a software package, PHYLIP locally and online. [Pg.269]

Department of Microbiology and Immunology University of British Columbia Vancouver, British Columbia, Canada [Pg.323]

National Center for Biotechnology Information National Library of Medicine National Institutes of Health Bethesda, Maryland [Pg.323]

There are three basic assiunptions in cladistics Any group of organisms is related by descent from a common ancestor (fundamental tenet of evolutionary theory). [Pg.324]

There is a bifurcating pattern of cladogenesis. This assumption is controversial. Change in characteristics occurs in lineages over time. This is a necessary condition for cladistics to work. [Pg.324]

The resulting relationships from cladistic analysis are most commonly represented by a phylogenetic tree [Pg.324]

Fredriksson R, Lagerstrom MC, Lundin LG et al (2003) The G-protein-coupled receptors in Hie human genome form five main families. Phylogenetic analysis, paralo-gon groups, and fingerprints. Mol Pharmacol 63 1256-1272... [Pg.564]

Histone Deacetylases (HDACs) catalyze the removal of the acetyl groups from lysines (see Fig. 1). Together with the HATs they are responsible for maintaining the level of histone acetylation throughout the genome. The family of HDAC proteins has been divided into four classes based on phylogenetic analysis and sequence comparison. HDACs of the classes I and II share the same Zn2+-based reaction and are evolutionary related. Class IV HDACs also possess a Zn2+-based reaction... [Pg.594]

Bjarnadottir TK, Gloriam DE, Hellstrand SH et al (2006) Comprehensive repertoire and phylogenetic analysis of the G protein-coupled receptors in human and mouse. Genomics 88 263-273... [Pg.917]

Fig. 8. Phylogenetic analysis of 16S rDNA sequence of the isolate V 33 (Tanamool et al, 2011)...

Matsuura, N., linuma, M. and Tanaka, T. 1994. Phylogenetic analysis in genus Euchresta based on secondary metabolites. Biochem. Syst. Ecol. 22 621-629. [Pg.322]

Powell, E. A. and Kron, K. A. 2002. Hawaiian blueberries and their relatives—a phylogenetic analysis of Vaccinium sections Macropelma, Myrtillus, and Hemimyrtillus (Ericaceae). Syst. Bot. 27 768-779. [Pg.325]

Taylor, E and Hill, R. 1996. A phylogenetic analysis of Eucryphiaceae. Aust. Syst. Bot. 9 735-748. [Pg.332]

Bnckley DH, JR Graber, TM Schmidt (1998) Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils. Appl Environ Microbiol 64 4333-4339. [Pg.79]

Lonergan DJ, HL Jenter, JD Coates, EJP Phillips, TM Schmidt, DR Lovley (1996) Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J Bacteriol 178 2402-2408. [Pg.159]

Freeborn RA, KA West, VK Bhupathiraju, S Chauhan, BG Rahm, RE Richardson, L Alvarez-Cohen (2005) Phylogenetic analysis of TCE-dechlorinating consortia enriched on a variety of electron donors. Environ Sci Technol 39 8358-8368. [Pg.687]

A. Willems, and M. D. Collins, Phylogenetic analysis of rhiz.obia and agrobacteria based on 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 43 305-313 (1993). [Pg.323]

The larger 16S rRNA gene (—1600 nucleotides) allows a broader phylogenetic analysis and a range of methods using 16S rRNA are available for the study of diversity within natural microbial populations. Four of these are addressed below. [Pg.392]

Gregoretti IV, Lee YM, Goodson HV (2004) Molecular evolution of the histone deacetylase family functional implications of phylogenetic analysis. J Mol Biol 338 17-31... [Pg.350]

Kampfer, S., Sturmbauer, C. and Ott, C.J. (1998) Phylogenetic analysis of rDNA sequences from adenophorean nematodes and implications for the Adenop11<> tea—Secernetea controversy. Invertebrate Biohgy 117, 29-36. [Pg.29]

Keddie, E.M., Higazi, T. and Unnasch, T.R. (1998) The mitochondrial genome of Onchocerca volvulus, sequence, structure and phylogenetic analysis. Molecuhr and BiochemicalParasitohgy 95, 111—127. [Pg.29]

Casiraghi, M., Anderson, T.J.C., Bandi, C., Bazzocchi, C. and Genchi, C. (2001) A phylogenetic analysis of filarial nematodes comparison with the phylogeny of Wolbachia endosymbionts. Parasitology (in press). [Pg.48]

O Neill, S.L., Giordano, R., Colbert, A.M.E., Karr, T.L. and Robertson, H.M. (1992) 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects. Proceedings of the National Academy of Sciences USA 89, 2699—2702. [Pg.50]

Johnson, A.M. and Baverstock, B.P. (1989) Rapid ribosomal RNA sequencing and the phylogenetic analysis of protists. Parasitology Today 5, 102-105. [Pg.85]

Gong J., Forster R.J., Yu H., Chambers J.R., Sabour P.M., Wheatcroft R. and Chen S. (2002). Diversity and phylogenetic analysis of bacteria in the mucosa of chicken caeca and comparison with bacteria in the caecal lumen . FEMS Microbiol Lett, 208, 1-7. [Pg.259]

St-Laurent, G., Beliveau, C., and Archambault, D., Molecular cloning and phylogenetic analysis of beluga whale (Delphinapterus leucas) and grey seal (Halichoerus grypus) interleukin 2, Vet. Immunol. Immunopathol., 67, 385, 1999. [Pg.420]

Holden, C. and Mace, R. (1997). Phylogenetic analysis of the evolution of lactose digestion in adults. Human Biology 69 605-628. [Pg.404]

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