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Phylogenetic analysis character-based methods

The third (default) method uses a table of empirically observed transitions between amino acids (the Dayhoff PAM 001 matrix). The character-based analysis of sequence data can be initiated via the appropriate executable file (e.g. DnaPars, DnaML or ProtPars). PHYLIP comprises DnaPars and DnaML to estimate phylogenetic relationships by the parsimony method and the maximum likelihood methods from nucleotide sequences respectively. ProtPars is the parsimony program for protein sequences. [Pg.695]

See other pages where Phylogenetic analysis character-based methods is mentioned: [Pg.272]    [Pg.66]    [Pg.467]    [Pg.329]    [Pg.106]    [Pg.116]    [Pg.186]    [Pg.66]    [Pg.120]    [Pg.186]    [Pg.186]    [Pg.101]    [Pg.111]    [Pg.173]    [Pg.210]    [Pg.116]    [Pg.215]    [Pg.220]    [Pg.251]    [Pg.228]    [Pg.107]   
See also in sourсe #XX -- [ Pg.468 , Pg.473 , Pg.474 , Pg.475 , Pg.476 ]



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Character-based phylogenetic

Character-based phylogenetic method

Characters method

Phylogenetic

Phylogenetic analysis

Phylogenetic analysis methods

Phylogenetic method

Phylogenetically based

Phylogenetics

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