Oxidoreductase coenzyme

Xanthobacter sp. strain Py2 may be grown with propene or propene oxide. On the basis of amino acid sequences, the monooxygenase that produces the epoxide was related to those that catalyzes the monooxygenation of benzene and toluene (Zhou et al. 1999). The metabolism of the epoxide is initiated by nucleophilic reaction with coenzyme M followed by dehydrogenation (Eigure 7.13a). There are alternative reactions, both of which are dependent on a pyridine nucleotide-disulfide oxidoreductase (Swaving et al. 1996 Nocek et al. 2002) ... 

Clark DD, JR Allen, SA Ensign (2000) Characterization of five catalytic activities associated with the NADPH 2-ketopropyl-coenzyme M [2-(2-ketopropylthio)ethanesulfonate] oxidoreductase/carboxylase of the Xanthobacter strain Py2 epoxide carboxylase system. Biochemistry 39 1294-1304. 

Nocek B, SB Jang, MS Jeong, DD Clark, SA Ensign, JW Peters (2002) Structural basis for COj fixation by a novel member of the disulfide oxidoreductase family of enzymes, 2-ketopropyl-coenzyme M oxidore-ductase/carboxylase. Biochemistry Al 12907-12913. 

Luo J, Fukuda E, Takase H et al (2009) Identification of the lysine residue responsible for coenzyme A binding in the heterodimeric 2-oxoacid ferredoxin oxidoreductase from Sulfo-lobus tokodaii, a thermoacidophilic archaeon, using 4-fluoro-7-nitrobenzofurazan as an affinity label. Biochim Biophys Acta 1794 335-340... 

NADH-coenzyme Q (CoQ) oxidoreductase, transfers electrons stepwise from NADH, through a flavoprotein (containing FMN as cofactor) to a series of iron-sulfur clusters (which will be discussed in Chapter 13) and ultimately to CoQ, a lipid-soluble quinone, which transfers its electrons to Complex III. A If, for the couple NADH/CoQ is 0.36 V, corresponding to a AG° of —69.5 kJ/mol and in the process of electron transfer, protons are exported into the intermembrane space (between the mitochondrial inner and outer membranes). 

Ferredoxins (Fds) are widespread in the three domains of life and an abundance of sequence data and structural information are available for Fds isolated from several sources. In particular, the bacterial type Fds are small electron-transfer proteins that posses cubane xFe-yS clusters attached to the protein matrix by Fe ligation of Cys via a conserved consensus ligating sequence. The archaeal type ferredoxins are water-soluble electron acceptors for the acyl-coenzyme A forming 2-oxoacid/ferredoxin oxidoreductase, a key enzyme involved in the central archaeal metabolic pathways. Fds have been distinguished according to the number of iron and inorganic sulphur atoms, 2Fe-2S, 4Fe-4S/3Fe-4S (Fig. Ib-d) and Zn-containing Fds. 

The transferases (class 2) catalyze the transfer of other groups from one molecule to another. Oxidoreductases and transferases generally require coenzymes (see pp.l04ff). 

All oxidoreductases (see p. 88) require coenzymes. The most important of these redox coenzymes are shown here. They can act in soluble form (S) or prosthetically (P). Their normal potentials E° are shown in addition to the type of reducing equivalent that they transfer (see p. 18). 

Riboflavin (from the Latin flavus, yellow) serves in the metabolism as a component of the redox coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD see p. 104). As prosthetic groups, FMN and FAD are cofactors for various oxidoreductases (see p. 32). No specific disease due to a deficiency of this vitamin is known. 

This zinc metalloenzyme [EC 1.1.1.1 and EC 1.1.1.2] catalyzes the reversible oxidation of a broad spectrum of alcohol substrates and reduction of aldehyde substrates, usually with NAD+ as a coenzyme. The yeast and horse liver enzymes are probably the most extensively characterized oxidoreductases with respect to the reaction mechanism. Only one of two zinc ions is catalytically important, and the general mechanistic properties of the yeast and liver enzymes are similar, but not identical. Alcohol dehydrogenase can be regarded as a model enzyme system for the exploration of hydrogen kinetic isotope effects. 

UV/Vis-spectroscopy is the classical method of analysis of enzyme activity. The principle is the change in absorption behavior of a substrate during the reaction process, for example by modification or Hberation of a chromophoric function. A number of enzymes from different classes can be assayed spectrophoto-metrically using their natural substrates or cofactors. In this way, activity of acetyltransferases can be estimated by measurement of absorption of acetyl coenzyme A at 232 nm [33]. Oxidoreductases which require a cofactor, e.g., NAD/NADH, to carry out the transfer of hydrogen can be characterized by measuring the absorption of this cofactor depending on its oxidation stage [33]. 

Aldose reductase (ALR2 EC 1.1.1.21) is an 36 kDa enzyme that catalyzes the reduction of a wide range of carbonyl-containing compounds to their corresponding alcohols. It is a member of an extensive aldo-keto oxidoreductase enzyme family, a collection of structurally similar proteins expressed in both animals and plants. Most members of the enzyme family possess similarities in molecular mass, pH optimum, coenzyme dependence, and demonstrate overlapping specificity for many substrates and inhibitors. 

The cytochrome P450 system is the principal enzyme system for the metabolism of lipophilic xenobiotics. It is a heme-containing, membrane-bound, multi-enzyme system which is present in many tissues in vivo but is present at the highest level in liver. A coenzyme, cytochrome P450 NADPH oxidoreductase (OR), is essential for P450 catalytic function and cytochrome bs may stimulate catalytic activities of some enzymes. In human liver, it is estimated that there are 15-20 different xenobiotic-metabolizing cytochrome P450 forms. A standard nomenclature, based on relatedness of the amino acid sequences, has been developed (Nelson et al., 1993). The most recent... 

Tire enzyme does not require lipoic acid. It seems likely that a thiamin-bound enamine is oxidized by an iron-sulfide center in the oxidoreductase to 2-acetyl-thiamin which then reacts with CoA. A free radical intermediate has been detected318 321 and the proposed sequence for oxidation of the enamine intermediate is that in Eq. 15-34 but with the Fe-S center as the electron acceptor. Like pyruvate oxidase, this enzyme transfers the acetyl group from acetylthiamin to coenzyme A. Cleavage of the resulting acetyl-CoA is used to generate ATR An indolepyruvate ferredoxin oxidoreductase has similar properties 322... 

Figure 16-31 (A) Structure of molybdopterin cytosine dinucleotide complexed with an atom of molybdenum. (B) Stereoscopic ribbon drawing of the structure of one subunit of the xanthine oxidase-related aldehyde oxidoreductase from Desulfo-vibrio gigas. Each 907-residue subunit of the homodimeric protein contains two Fe2S2 clusters visible at the top and the molybdenum-molybdopterin coenzyme buried in the center. (C) Alpha-carbon plot of portions of the protein surrounding the molybdenum-molybdopterin cytosine dinucleotide and (at the top) the two plant-ferredoxin-like Fe2S2 clusters. Each of these is held by a separate structural domain of the protein. Two additional domains bind the molybdopterin coenzyme and there is also an intermediate connecting domain. In xanthine oxidase the latter presumably has the FAD binding site which is lacking in the D. gigas enzyme. From Romao et al.633 Courtesy of R. Huber.

Fig. 14. EPR spectra of carbon monoxide oxidoreductase from C. thermoaceticum, treated with CO plus coenzyme A. Solid lines are experimental spectra, dashed lines are computer simulations, with gx= gf = 2.074, g2 = 2.028. Substitutions with 61Ni and 57Fe were made by growth of the organism on the appropriate isotopes, (a) Effect of substitution with 6lNi. Simulation assumes AM = 3 MHz, A, = 20 MHz. (b, p. 328) Effects of substitution with 5,Fe and l3C. The simulation of the 57Fe spectrum assumes one iron atom with Ah = 40 MHz, A = 60 MHz, and two iron atoms with A, = 20 MHz, A = 30 MHz. The simulation of the l3C spectrum assumes An = 26 MHz, A = 13 MHz. Spectra provided by courtesy of Dr. S. G, Ragsdale.

Isolated oxidoreductases always depend on cofactors for the transfer of electrons. Enzyme groups which are well characterized with respect to their biochemistry are those requiring the nicotinamide coenzymes NAD or NADP, the flavins FAD or FMN and the ortho-quinoids such as pyrroloquinoline quinone (PQQ) or trihydroxy-phenylalanine (TOPA). 

Enzymes are highly selective of the substrates with which they interact and in the reactions that they catalyze. This selective nature of enzymes collectively known as enzyme specificity can be best illustrated with oxidoreductases (dehydrogenases), which display substrate and bond specificities (e.g., acting on —CHOH—, versus —CHO versus —CH—CH— versus —CHNH2, and cis versus trans for unsaturated substrates), coenzyme specificity (e.g., NAD(H) versus NADP(H)), chiral stereospecificity (d- versus l- or R- versus S-stereoisomers), and prochiral stereospecificity (A versus B corresponding to proR- versus proS isomers and re face versus si face, respectively). The table lists some dehydrogenases and their coenzyme, substrate, product and stereospecificities (You, 1982) ... 

Fig. 1.2. Maps of pyruvate metabolism in trichomonad hydrogenosomes published in 1976 (a) and 2003 (b). Metabolism of malate omitted. 1 pyruvate ferredoxin oxidoreductase, 2 hydroge-nase, 3 electron transport protein (unidentified in 1976, known to be ferredoxin in 2003), 4 acetate succinate coenzyme A (CoA) transferase, 5 succinyl-CoA synthase, 6 acetyl-CoA synthase (its presence was not confirmed later), (a From Fig. 2 in Muller 1976 b from Fig. 7.3 in Muller 2003)...

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