Nucleobases prebiotic syntheses

Formamide is itself hydrolyzed by water, meaning that it persists only in a relatively dry environment, such as a desert. Desert environments recently proposed as being potential sites for the prebiotic synthesis of ribose18 may hold formamide as well. Since formamide boils at —400 K, a mixture of formamide and water, if placed in the desert, would lose its water over time and end up as a pool of formamide. Within this pool, many syntheses are thermodynamically favorable polypeptides from amino acids, nucleosides from sugars and bases, nucleotides from nucleosides and inorganic phosphate, and RNA from nucleotides. Indeed, phosphate esters are also spontaneously synthesized. This includes ATP (from ADP and inorganic phosphate), nucleosides (from ribose borates and nucleobases), peptides (from amino acids), and others.19-21... 

The term chemical evolution" was introduced by the Nobel Prize winner Melvin Calvin and refers to the process of the synthesis of biochemically important molecules from small molecules and certain chemical elements under the (hypothetical) conditions present on prebiotic Earth. It is assumed that the smaller building block molecules such as amino acids, fatty acids or nucleobases were formed initially, and that these underwent polycondensation to give macromolecules in later stages of development. 

Until the 1980s, yields of nucleobases obtained in prebiotic syntheses were very small. Thus, some scientists assumed that in earlier phases of molecular evolution, the nucleic acids used other bases in their information-transmitting substances. Piccirilli et al. (1990) suggested isocytosine and diaminopyridine, while Wachtershauser (1988) suggested that the first genetic material possibly consisted only of purines. However, pyrimidine (about a fifth of the total amount of purines present) had been detected in the Murchison meteorite, so that an effective pyrimidine synthesis should have been possible. 

Zubay and Mui (2001) have pointed out an important, but as yet unsolved, problem of prebiotic nucleotide synthesis the nitrogen-containing nucleobases very probably have HCN as the main precursor for their construction. In the case of... 

A further unusual feature of the matrix-dependent polycondensation lies in the character of the nucleobases themselves. Purine mononucleotides undergo polycondensation, in good yields, at complementary matrices consisting of pyrimidine polymers. However, the synthesis of pyrimidine oligonucleotides from their mononucleotides at purine matrices is not effective. This important fact means that a pyrimidine-rich matrix leads to a purine-rich nucleic acid, which is itself not suitable to act as a matrix. This phenomenon also occurs when matrices are used which contain both basic species, i.e., purines and pyrimidines. An increase in the amount of purine in a matrix leads to a clear decrease in its effectiveness (Inoue and Orgel, 1983). However, the authors note self-critically that the condensation agent used cannot be considered to be prebiotic in nature. 

An alternative to the terrestrial synthesis of the nucleobases is to invoke interstellar chemistry. Martins has shown, using an analysis of the isotopic abundance of 13C, that a sample of the 4.6 billion year old Murchison meteorite which fell in Australia in 1969 contains traces of uracil and a pyrimidine derivative, xanthine. Samples of soil that surrounded the meteor when it was retrieved were also analyzed. They gave completely different results for uracil, consistent with its expected terrestrial origin, and xanthine was undetectable [48], The isotopic distributions of carbon clearly ruled out terrestrial contamination as a source of the organic compounds present in the meteorite. At 0°C and neutral pH cytosine slowly decomposes to uracil and guanine decomposes to xanthine so both compounds could be the decomposition products of DNA or RNA nucleobases. They must have either travelled with the meteorite from its extraterrestrial origin or been formed from components present in the meteorite and others encountered on its journey to Earth. Either way, delivery of nucleobases to a prebiotic Earth could plausibly have been undertaken by meteors. The conditions that formed the bases need not have been those of an early Earth at all but of a far more hostile environment elsewhere in the Solar System. That environment may have been conducive to the production of individual bases but they may never have been able to form stable DNA or RNA polymers this development may have required the less extreme conditions prevalent on Earth. 

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