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NCBI databases

Recently the genome sequence of Methylobacillus flagellatus KT was deposited into the NCBI database and provided a match to our sequence data with a database entry (ZP 00173833). The protein was identified as a hypothetical protein Mflag020121. The sequence of this protein along with the sequences matching the tryptic fragments from our E. sakazakii marker protein (shown underlined) is... [Pg.221]

Entrez (http //www.ncbi.nih.gov/entrez), information retrieval system, integrating NCBI databases of protein and nucleotide sequences, genomes, macromolecular stmctures, and MEDLINE literature database. [Pg.343]

Distantly related possible homologues of plant ACS were found in the genomes of green algae, mosses, fungi, and several vertebrates including humans, according to NCBI database. The function of the encoded protein has not yet been resolved. [Pg.101]

Data sources Expasy and InterPro, and NCBI databases, accessed August 2002. [Pg.439]

Sherry ST, Ward MH, Kholodov M et al. dbSNP the NCBI database of genetic variation. Nucleic Acids Rei 2001 29 308-311. [Pg.86]

Please refer to the human apoCII sequence in the NCBI database (accession number M10612.1 at http //www.ncbi.nlm.nih.gov/entrez/query.fcgifdb = Nucleotide). [Pg.505]

Used in conjunction with the online tutorials found at www.whfreeman.com/young, Exploring Genomes guides students through live searches and analyses on the most commonly used National Center for Biotechnology Information (NCBI) database. [Pg.1124]

Dysbindin-IA is the full-length isoform, the mouse ortholog of which was the first dysbindin protein identified (Benson et al., 2001). This is the protein meant when dysbindin is used without qualification. Dysbindin-1A is a 351 aa protein in humans orthologs in other species are 339-362 aa in length. Such orthologs have been identified not only in humans and mice, but also in the cow, pig, rat, chicken, frog, zebrafish, and amphioxus ( Table 2.2-1). There is also some evidence for dysbindin-lA in sheep (NP 01119821) and the chimpanzee (XP 001169961) in the NCBI database. All known dysbindin-lA orthologs have one or more PEST domain at or near the end of the CTR (e.g., see Table 2.2-3). [Pg.113]

Specifically degree of identical sequence alignment based on NCBI Blast 2 comparisons bBased on the predicted chimpanzee dysbindin-IA (XP 001169961 in NCBI database)... [Pg.144]

Subsequently, over 20 different APP missense mutations have been identified in 60 families. Interestingly, most of these mutations are located at exons 16 and 17 where the secretase cleavage sites or the APP transmembrane domain are located (Fig. 2). Information regarding APP mutations is available in the NCBI database and the Alzheimer Disease Mutation Database (www.molgen.ua.ac.be/ ADMutations) (Cruts and Van Broeckhoven, 1998). Mutations within APP account for 10-15% of EOFAD (Bird, 2008 Janssen et al., 2003 Raux et al., 2005 Sherrington et al., 1996), appear to be family specific, and do not occur within the... [Pg.700]

NCBI Handbook Guide to Databases and Bioinformatics. 2003-. National Center for Biotechnology Information, NLM, NIH. URL http //www.ncbi.nlm.nih.gov/books/bv.fcgi call=bv.View.ShowSection rid=handbook. NCBI databases and search engines with information on how the databases work and how they can be leveraged for bioinformatics research on a larger scale. [Pg.52]

This is particularly useful when a new genome of that vims family has been deposited in the NCBI database and the ReHAB query database. [Pg.193]

Database searches were performed against a non-redundant NCBI database using Mascot (Matrix Science, London, UK) selecting human and/or rodent species. Parent ion and fragment ion mass tolerances were both set at 0.6 Da. [Pg.177]

Below it shows the list of organisms whose plastome has been completely sequenced, as obtained from the NCBI database (Table 1). [Pg.57]

Entrez searches can be performed using one of two Internet-based interfaces. The first is a client-server implementation known as NetEntrez. This makes a direct connection to an NCBI computer. Because the client software resides on the user s machine, it is up to the user to obtain, install and maintain the software, downloading periodic updates as new features are introduced. The second implementation is over the World Wide Web and is known as WWW Entrez or WebEntrez (simply referred to as Entrez). This option makes use of available Web browsers (e.g., Netscape or Explorer) to deliver search results to the desktop. The Web allows the user to navigate by clicking on selected words in an entry. Furthermore, the Web implementation allows for the ability to link to external data sources. While the Web version is formatted as sequential pages, the Network version uses a series of windows with faster speed. The NCBI databases are, by far the most often accessed by biochemists and some of their searchable fields include plain text, author name, journal title, accession number, identity name (e.g., gene name, protein name, chemical substance name), EC number, sequence database keyword and medical subject heading. [Pg.551]


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See also in sourсe #XX -- [ Pg.551 ]




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NCBI databases Biotechnology Information

Sequence Databases Beyond NCBI

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