Mutation adaptive

R. Lewontin has pointed out to me that a mutation adapting a species to a new environment is likely to have preceded occupation of that environment. For example, a mutation that raised the oxygen affinity of the llama s blood would have occurred before llamas discovered that they were able to graze at altitudes barred to competing species. W. Bodmer suggested that once a large change in chemical affinities produced by one mutation had enabled a species to occupy a new envi-... 

Table 1. Examples of chemically induced mutations (adapted from Topal (2))...

Mutations, Adaptation, Resistance, Immunity and Chemotherapy, and Ensyme Problems (Sevag). VI 33... 

The evolutionary process of a genetic algorithm is accomplished by genetic operators which translate the evolutionary concepts of selection, recombination or crossover, and mutation into data processing to solve an optimization problem dynamically. Possible solutions to the problem are coded as so-called artificial chromosomes, which are changed and adapted throughout the optimization process until an optimrun solution is obtained. 

Some polymyxins are sold for second-line systemic therapy. Polymyxin B sulfate and colistimethate sodium can be used for intravenous, intramuscular, or intrathecal administration, especially for Pseudomonas aerupinosa mP QXiosis, but also for most other gram-negative organisms, such as those resistant to first-line antibiotics. Nephrotoxicity and various neurotoxicities are common in parenteral, but not in topical, use. Resistance to polymyxins develops slowly, involves mutation and, at least in some bacteria, adaptation, a poorly understood type of resistance that is rapidly lost on transfer to a medium free of polymyxin. Resistance can involve changes in the proteins, the lipopolysaccharides, and lipids of the outer membrane of the cell (52). Polymyxin and colistin show complete cross-resistance. 

Arthur Lesk and Cyrus Chothia at the MRC Laboratory of Molecular Biology in Cambridge, UK, compared the family of globin strucfures with the aim of answering two general questions How can amino acid sequences that are very different form proteins that are very similar in their three-dimensional structure What is the mechanism by which proteins adapt to mutations in the course of their evolution ... 

The proteins thus adapt to mutations of buried residues by changing their overall structure, which in the globins involves movements of entire a helices relative to each other. The structure of loop regions changes so that the movement of one a helix is not transmitted to the rest of the structure. Only movements that preserve the geometry of the heme pocket are accepted. Mutations that cause such structural shifts are tolerated because many different combinations of side chains can produce well-packed helix-helix interfaces of similar but not identical geometry and because the shifts are coupled so that the geometry of the active site is retained. 

The globin fold has been used to study evolutionary constraints for maintaining structure and function. Evolutionary divergence is primarily constrained by conservation of the hydrophobicity of buried residues. In contrast, neither conserved sequence nor size-compensatory mutations in the hydrophobic core are important. Proteins adapt to mutations in buried residues by small changes of overall structure that in the globins involve movements of entire helices relative to each other. 

Figure 14.2 Models of a collagen-like peptide with a mutation Gly to Ala in the middle of the peptide (orange). Each polypeptide chain is folded into a polyproline type II helix and three chains form a superhelix similar to part of the collagen molecule. The alanine side chain is accommodated inside the superhelix causing a slight change in the twist of the individual chains, (a) Space-filling model, (b) Ribbon diagram. Compare with Figure 14.1c for the change caused by the alanine substitution. (Adapted from J. Bella et al.. Science 266 75-81, 1994.)...

Figure 17.5 Diagram of the T4 lysozyme stmcture showing the iocations of two mutations that stabilize the protein stmcture by providing eiectrostatic interactions with the dipoles of a helices. (Adapted from H. Nicholson et al.. Nature 336 651-656, 1988.)...

Short replication cycles that may be completed within a few hours, a large amount of viral progeny from one infected host-cell, as well as the general inaccuracy of viral nucleic acid polymerases result in an evolution occurring in fast motion, allowing rapid adaptation of viruses to selective pressures (see chapter by Boucher and Nijhius, this volume). Generalizing, it can be stated that any effective antiviral therapy will lead to the occurrence of resistance mutations. A well studied example... 

A shift in temperature from 38 to 22 °C leads to desaturation of fatty acids in Anabaena variabilis [110], resulting in control of the fluidity of the plasma membrane. Mutants have been isolated in Synechocystis PCC 6803 that were defective in desaturation of fatty acids, and the growth rate of one of these mutants was much lower than that of the wild-type at 22 °C [112]. It turned out that the mutant strain had a mutation in the gene desA, and when the wild-type allele was introduced into the chilling-sensitive cyanobacterium Anacystis nidulans, it resulted in increasing the tolerance of that strain to low temperature [113]. These experiments nicely demonstrate the existence of a mechanism of adaptation to low temperature in a chilling-tolerant cyanobacterium. 

Bacterial resistance to biocides (Table 13.2) is usually considered as being of two types (a) intrinsic (innate, natural), a natural property of an organism, or (b) acquired, either by chromosomal mutation or by the acquisition of plasmids or transposons. Intrinsic resistance to biocides is usually demonstrated by Gram-negative bacteria, mycobacteria and bacterial spores whereas acquired resistance can result by mutation or, more frequently, by the acquisition of genetic elements, e.g. plasmid- (or transposon-) mediated resistance to mercury compounds. Intrinsic resistance may also be exemplified by physiological (phenotypic) adaptation, a classical example of which is biofilm production. 

The notion that the segment containing C3 and T3 is important for conformational adaptability of the protein is supported by mutations in yeast. Mutations of the genes of the H-ATPase of Saccharomyces cerevisiae resulted in a thermo-sensitive... 

Platt EJ, Kuhmann SE, Rose PP, Rabat D. Adaptive mutations in the V3 loop of gpl20 enhance fusogenicity of human immunodeficiency virus type 1 and enable use of a CCR5 coreceptor that lacks the amino-terminal sulfated region. J Virol 2001 75(24) 12266-12278. 

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