Molecular formulas, high-resolution

Hexachlorobenzene Having the same molecular formula High resolution mass spectrometry Air-water partition coefficient Octanol-air partition coefficient Octanol-water partition coefficient Long chain chlorinated paraffins... 

Section 13.4 Determination of Molecular Formulas High-Resolution Mass Spectrometry... 

Determination of exact molecular mass -high-resolution instruments enable the molecular formula of a compound to be determined by summation of the masses of the individual isotopes of atoms, e.g. both ethane and methanal have integral... 

In general terms, the main function of the magnetic/electric-sector section of the hybrid is to be able to resolve m/z values differing by only a few parts per million. Such accuracy allows highly accurate measurement of m/z values and therefore affords excellent elemental compositions of ions if these are molecular ions, the resulting compositions are in fact molecular formulae, which is the usual MS mode. Apart from accurate mass measurement, full mass spectra can also be obtained. The high-resolution separation of ions also allows ions having only small mass differences to be carefully selected for MS/MS studies. 

By high-resolution mass spectrometry, ions of known mass from a standard substance can be separated from ions of unknown mass derived from a sample substance. By measuring the unknown mass relative to the known ones through interpolation or peak matching, the unknown can be measured. An accurate mass can be used to obtain an elemental composition for an ion. If the latter is the molecular ion, the composition is the molecular formula. 

This hybrid is used in one form to measure highly accurate m/z values to obtain excellent elemental compositions of ions and therefore molecular formulae from molecular ions in the other form, it is used to obtain MS/MS data at high resolution. 

The male sex hormone testosterone contains C, H, and O and has a mass of 288.2089 amu as determined by high-resolution mass spectrometry. What is the likely molecular formula of testosterone ... 

Write molecular formulas for compounds that show the following molecular ions in their high-resolution mass spectra. Assume that C, H, N, and O might be present, and use the exact atomic masses given in Section 12.2. 

Camphor, a saturated monoketone from the Asian camphor tree, is used among other things as a moth repellent and as a constituent of embalming fluid. If camphor has M+ = 152.1201 by high-resolution mass spectrometry, what is its molecular formula How many rings does camphor have ... 

B Nicotine is a diamino compound isolated from dried tobacco leaves. Nicotine has two rings and M + = 162.1157 by high-resolution mass spectrometry. Give a molecular formula for nicotine, and calculate the number of double bonds. 

Structure of Oxy-F Compound F is extremely unstable and is difficult to obtain at a level of purity suitable for NMR studies. However, an oxidation product, Oxy-F, formed when F is left standing at — 20° C, is considerably more stable than F and can be purified to a sufficiently high level of purity. Oxy-F is nonfluorescent and shows absorption maxima at 237 nm and 275 nm (shoulder). The high-resolution FAB mass spectrum indicated the molecular formula of Oxy-F to be C33H3809N4Na2 [m/z 703.2363 (M + Na)+ and 681.2483 (M + H)"1"]. The H and 13C NMR data allowed the assignment of structure 7 to oxy-F (Fig. 3.2.6 Nakamura et al., 1988). 

The luciferin produces a blue oxidation product during its purification process. In the DEAE chromatography of luciferin, this blue compound is eluted before the fractions of luciferin. The fractions of the blue compound were combined and purified by HPLC on a column of Hamilton PRP-1 (7 x 300 mm) using methanol-water (8 2) containing 0.1% ammonium acetate. The purified blue compound showed absorption peaks at 234, 254, 315, 370, 410, 590 (shoulder) and 633 nm. High-resolution FAB mass spectrometry of this compound indicated a molecular formula of C l C Nai m/z 609.2672 (M - Na + 2H)+, and mlz 631.2524 (M + H)+]. These data, together with the HNMR spectral data, indicated the structure of the blue compound to be 8. 

The samples of PM-2 and PM-3 probably consist of at least 3 kinds of isomers with the same molecular formula according to high-resolution chromatography. 

The molecular formulas of PMs (Table 9.5) obtained by high-resolution mass spectrometry in collaboration with Prof. Y. Kishi, Harvard University, indicate that PMs are formed by the condensation of three molecules of PS and two molecules of methylamine, with the removal of four water molecules. No study has been made on their conformational isomers. 

The following is a procedure recommended for elucidating the structure of complex organic molecules. It uses a combination of different NMR and other spectroscopic techniques. It assumes that the molecular formula has been deduced from elemental analysis or high-resolution mass spectrometry. Computer-based automated or interactive versions of similar approaches have also been devised for structural elucidation of complex natural products, such as SESAMI (systematic elucidation of structures by using artificial machine intelligence), but there is no substitute for the hard work, experience, and intuition of the chemist. 

Peaks are analyzed separately by their retention times, absorption, and fluorescence properties. RCCs show absorbance maxima near A.500 and 316 nm. For FCCs, UV-Vis specna show two prominent bands near 361 and 320 mn and a luminescence maximum at 436 mn and NCCs show UV-Vis spectra with absorbance maxima near 320 and 210 nm. Nevertheless, as none of these approaches is suitable for elucidating structures, it is necessary to apply additional MS and NMR analyses to fully characterize snuctural features. Electron spray ionization (ESI) and high-resolution EAB mass spectroscopy have been applied to elucidate the molecular formulae of colorless compounds. ... 

Molecular formulae from high-resolution mass measurements... 

If you are lucky, the ion with the highest mass to charge value will be the molecular ion. However, this is often not the case, as textbooks on mass spectrometry make clear. If it is possible to carry out high resolution mass spectrometry on the molecules in question, and the molecular ion is indeed observed, the exact mass can be used in combination with tables to obtain the molecular formula directly. Alternatively, you can use the internet (http //www.sisweb. com/cgi-bin/masslO.pl) to calculate and plot mass distributions for any molecular fragment you think may be present. 

Currently, LC-MS is widely used for the analysis of polar compounds, such as medicinal metabolites and bioactive peptides, since the interface has been improved and several new ionization methods have been developed. The sensitivity and reproducibility are sufficient for a daily quantitative analysis. The usefulness of the LC-MS has been demonstrated for studies on Type II pheromones using a time-of-flight MS with electrospray ionization (ESI) [180]. Each epoxydiene derived from the (Z3,Z6,Z9)-triene shows three ion series of [M+NHJ+, [M+H]+, and [M-OH]+ with high resolution and good sensitivity, indicating its molecular formula. In addition to these, characteristic fragment... 

As noted in the introduction, vibrations in molecules can be excited by interaction with waves and with particles. In electron energy loss spectroscopy (EELS, sometimes HREELS for high resolution EELS) a beam of monochromatic, low energy electrons falls on the surface, where it excites lattice vibrations of the substrate, molecular vibrations of adsorbed species and even electronic transitions. An energy spectrum of the scattered electrons reveals how much energy the electrons have lost to vibrations, according to the formula ... 

Peripentadenia is a monotypic genus of the family Elaeocarpaceae represented by Peripentadenia mearsii (C. T. White) L. S. Smith, a tree growing in rain forests of northern Queensland. Besides unidentified minor alkaloids, the species yields one major alkaloid, peripentadenine (49) (87). Its molecular formula, C22H34N203, was established by high-resolution mass spectroscopy the presence of phenol, ketone, secondary amide, and tertiary amine functionalities was deduced from examination of spectroscopic data. 

Pseudopterosin X (1) was isolated as a yellow colored gum. The UV spectrum of 1 showed maximum absorption at 280 nm due to the presence of a highly substituted benzene chromophore [10], Its IR spectmm displayed intense absorption bands at 3,470 (OH), 2,904 (CH), 1,705 (C = O), 1,595 (C = C) and 1,100 (C-0) cm . The high-resolution electron-impact mass spectmm (HREIMS) of 1 showed M+ at m/z 474.2622, and this mass provided molecular formula indicating the presence of nine double bond equivalents in 1. The C-NMR chemical shift assignments of 1 are shown around stracture 1. On the basis of the detailed NMR studies and comparison with the reported pseudopterosins in the literature and L-xylose [3-5], stmcture 1 was proposed for this new natural product. 

MS, chemical ionization-MS, and sometimes GC/infrared spectroscopy (IR) have been used with GC/MS to obtain structural information. Examples of the use of GC/ MS for identifying new DBFs include the recent identification of iodo-acids. The iodo-acids were discovered in drinking water treated with chloramination through the use of full-scan GC/MS on the methylated extracts. Empirical formula information for both the molecular ions and the fragment ions was obtained by high-resolution electron ionization (EI)-MS, and the spectra were interpreted to yield tentative identifications of five new iodo-acids (iodoacetic acid, bromoiodoacetic acid, ( )-3-bromo-3-iodopropenoic acid, (Z)-3-bromo-3-iodopropenoic acid, and )-2-iodo-3-methylbutenedioic acid). Structural assignments were then confirmed by the match of mass spectra and GC retention times to authentic chemical standards, several of which had to be synthesized. 

Pseudovinblastinediol (21) (formerly named pseudovincaleukoblas-tinediol) has been isolated from C. rose us as a minor constituent (44). The high-resolution mass spectrum of 21 established a molecular formula of C44H5ftN40g. The characteristic vindoline fragments of miz 469 and 282 were shifted 58 mass units to miz 411 and 224, respectively, indicating the... 

---