Metalloproteins models

Modeling of structures and molecular properties of transition metal compounds -toward metalloprotein modeling . 

We prepared three bifunctional redox protein maquettes based on 12 16-, and 20-mer three-helix bundles. In each case, the helix was capped with a Co(III) tris-bipyridyl electron acceptor and also functionalized with a C-terminal viologen (l-ethyl-V-ethyl-4,4 -bipyridinium) donor. Electron transfer (ET) was initiated by pulse radiolysis and flash photolysis and followed spectrometrically to determine average, concentration-independent, first-order rates for the 16-mer and 20-mer maquettes. For the 16-mer bundle, the a-helical content was adjusted by the addition of urea or trifluoroethanol to solutions containing the metal-loprotein. This conformational flexibility under different solvent conditions was exploited to probe the effects of helical secondary structure on ET rates. In addition to describing experimental results from these helical systems, this chapter discusses several additional metalloprotein models from the recent literature. 

Comba, P. Modeling of structures and molecular properties of transition metal compounds - toward metalloprotein modeling. In Molecular Modeling and Dynamics of Bioinorganic Systems Band, L. Comba, P., Eds. Kluwer Academic Publishers Dordrecht, 1997, p. 21. 

Horrocks WD Jr, Rhee M-J, Snyder AP, Sudnick DR. leaser-induced metal ion luminescence interlanthanide ion energy transfer distance measurements in the calcium-binding proteins, parvalbiunin, and thermolysin. Metalloprotein models address a photophysical problem. J Am Chem Soc. 1980 102(10) 3650 3652. 

Macrocyclic Complexes as Models for Nonporphine Metalloproteins Vickie McKee... 

A number of zinc selenium complexes have now been characterized, with particular interest in the formation of zinc selenide semiconductors and quantum dots. In many cases analogous structures to those observed with thiol or thiolates are recorded. 77Se NMR is frequently used in characterization, and comparison with the sulfur equivalent is relevant. Zinc selenium compounds are of particular interest as precursors for metal/selenide materials and their relevance as models for selenocysteine-containing metalloproteins. 

In metalloproteins two paramagnets can be much farther apart, and so the dipolar interaction can be correspondingly weaker. Furthermore, the centers will usually each have significant g-anisotropy, and their local structures will differ and will have a complex mutual geometrical relationship. We therefore use the symmetric biradical as a simple model to obtain a first impression of the type of spectral patterns to be encountered. 

Neese, F. 2003. Quantum chemical calculations of spectroscopic properties of metalloproteins and model compounds EPR and Mossbauer properties. Current Opinion in Chemical Biology 7 125-135. 

Zinc is the active metal in the largest group of metalloproteins found in the nature. Recently a new class of zinc enzymes with a sulfur-rich environment has emerged the thiolate-alkylating enzimes, the most prominent of which is the cobalamine-independent methionine synthase.126 For these reasons several monothiolate zinc complexes have been prepared for the modelling of these enzymes with different N2S as (13),127 130 N20,13° 132 N3,132,133 S3,134 tripod ligands, or with Cd because of the favourable spectroscopic properties with an S3 tripod ligand.135... 

NMR, EPR, EXAFS, infrared, resonance Raman, and ultraviolet-visible spectroscopy should follow. Kinetic and thermodynamic information about the model complexes in comparison to that known for natural systems should be gathered. These concepts were updated in 1999 by Karlin, writing in reference 49. Model studies should provide reasonable bases for hypotheses about a biological structure and its reaction intermediates. Researchers should determine the model s competence in carrying out reactions that mimic metalloprotein chemistry. Using these methods and criteria, researchers may hope to exploit Cu-oxygen systems as practical dioxygen carriers or oxidation catalysts for laboratory and industrial purposes. 

This discussion of copper-containing enzymes has focused on structure and function information for Type I blue copper proteins azurin and plastocyanin, Type III hemocyanin, and Type II superoxide dismutase s structure and mechanism of activity. Information on spectral properties for some metalloproteins and their model compounds has been included in Tables 5.2, 5.3, and 5.7. One model system for Type I copper proteins39 and one for Type II centers40 have been discussed. Many others can be found in the literature. A more complete discussion, including mechanistic detail, about hemocyanin and tyrosinase model systems has been included. Models for the blue copper oxidases laccase and ascorbate oxidases have not been discussed. Students are referred to the references listed in the reference section for discussion of some other model systems. Many more are to be found in literature searches.50... 

Introduce instrumental techniques used in analysis of the bioinorganic systems I will lecture on (Chapter 3 Instrumental and Computer-Based Methods). Typically, these would be electron paramagnetic resonance (EPR) and Mossbauer spectroscopies not often covered in undergraduate instrumental analysis courses plus X-ray diffraction and NMR techniques used for structural analyses of metalloproteins and their small molecule model compounds. 

While recognizing that this is a supreme example of reductionist simplification, it nonetheless allows us to situate the three model systems that we will consider here, because the mechanisms of metal assimilation are often significantly different. Finally, once the metal ions have been assimilated, they must be incorporated into the corresponding proteins, we have already presented in Chapter 3 a brief consideration of some of the ways in which metal centres, whether individual metal ions or more complex metal clusters, are engineered into their metalloprotein targets. 

Professor Sabyasachi Sarkar (bom in 17 May 1947) is an Indian Chemist. He has explored chemistry passionately as a prospector to observe closely the clandestine activities of nature. He has worked and continued working in the diverse branches of chemistry closely related to natural set up and as such his research embraces functional models related to hyperthermophilic to mesophilic metalloproteins enriching bioinorganic chemistry. A Rephca of a Fishy Enzyme and the reduced xanthine oxidase also have been made. Inhibition patterns in the Michaelis complex of low molecular weight hepatic sulfite oxidase model complex have been exhibited. He demonstrated that carbon dioxide molecule does bind... 

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