Metabolite identification tandem mass spectrometer

Commercial LITs were introduced in 2002 as either a stand-alone mass spectrometer (LTQ) [318] or as part of a triple quadrupole (Q-Trap) [319] or in 2005 as part of hybrid tandem mass spectrometers (LTQ-Orbitrap and LTQ-FTICR) [88,90], Application of LTQ-FTICR for metabolism studies has been reviewed by Shipkova et al. [90], In comparison to other mass analyzer types, FTICR-based mass spectrometers are not very popular for metabolite identification studies due to availability of less expensive and more user-friendly LTQ-Orbitrap and Q-TOF-based systems. Another limitation associated with the FTICR-based hybrid mass spectrometers is the TOF effect, which results in efficient trapping of only the high-mass ions [90],... 

Multiple mass analyzers exist that can perform tandem mass spectrometry. Some use a tandem-in-space configuration, such as the triple quadrupole mass analyzers illustrated (Fig.3.9). Others use a tandem-in-time configuration and include instruments such as ion-traps (ITMS) and Fourier transform ion cyclotron resonance mass spectrometry (FTICRMS or FTMS). A triple quadrupole mass spectrometer can only perform the tandem process once for an isolated precursor ion (e.g., MS/MS), but trapping or tandem-in-time instruments can perform repetitive tandem mass spectrometry (MS ), thus adding n 1 degrees of structural characterization and elucidation. When an ion-trap is combined with HPLC and photodiode array detection, the net result is a profiling tool that is a powerful tool for both metabolite profiling and metabolite identification. 

In tandem MS mode, because the product ions are recorded with the same TOF mass analyzers as in full scan mode, the same high resolution and mass accuracy is obtained. Isolation of the precursor ion can be performed either at unit mass resolution or at 2-3 m/z units for multiply charged ions. Accurate mass measurements of the elemental composition of product ions greatly facilitate spectra interpretation and the main applications are peptide analysis and metabolite identification using electrospray iomzation [68]. In TOF mass analyzers accurate mass determination can be affected by various parameters such as (i) ion intensities, (ii) room temperature or (iii) detector dead time. Interestingly, the mass spectrum can be recalibrated post-acquisition using the mass of a known ion (lock mass). The lock mass can be a cluster ion in full scan mode or the residual precursor ion in the product ion mode. For LC-MS analysis a dual spray (LockSpray) source has been described, which allows the continuous introduction of a reference analyte into the mass spectrometer for improved accurate mass measurements [69]. The versatile precursor ion scan, another specific feature of the triple quadrupole, is maintained in the QqTOF instrument. However, in pre-... 

Superior sensitivity, efficiency, and specificity have made high-performance liquid chromatography coupled with tandem mass spectrometry (HPLC-MS/MS), the predominant analytical technique for characterization and quantitative analysis of metabolites (Kostiainen et al., 2003 Ma et al., 2006 Prakash et al., 2007). Ion trap, triple-quadrupole, and quadmpole time-of-flight (Q-TOF) mass spectrometers are routinely used to profile and characterize metabolites in plasma and excreta (Ma et al., 2006). The combination of scan types and features available on mass spectrometers of different design (product ion, MS", neutral loss, precursor ion scans, accurate mass measurements) allows identification and characterization of putative and unexpected metabolites with or without little prior knowledge of biotransformation pathways of a given dmg molecule. 

Nassar, A. E. (2003). Online hydrogen-deuterium exchange and a tandem-quadrupole time-of-flight mass spectrometer coupled with liquid chromatography for metabolite identification in drug metabolism. J. Chromatogr. Sci. 41 398-404. 

Triple quadrupole mass spectrometers can perform tandem mass scan experiments in various modes including product ion (MS/MS), precursor ion, and neutral loss scan and SRM experiments, but they cannot be used for sequential MS" experiments. The high sensitivity and specificity, in the SRM mode, have made triple quadrupole mass spectrometers a logical choice for metabolic stability experiments performed at relevant substrate concentrations. Despite the sensitivity of the triple quadrupole mass spectrometers, when an NCE or an NCE series exhibit unacceptable PK properties, metabolite identification studies are often initiated as follow-up studies in a separate set of experiments using incubation concentrations higher than the Km of an NCE. Incubations at higher concentrations are required because conventional metabolite identification experiments required operation of the triple quadrupole mass spectrometer in the full-scan mode, which results in poor duty cycle and diminished sensitivity [287,288],... 

Traditionally, quantitative analysis of drugs and their metabolites both in vivo and in vitro is mainly dependent on multiple reaction monitoring (MRM) with triple quadruple instruments. In contrast, drug metabolite detection and identification often involve various types of mass spectrometers (Ma and Chowdhury, 2007 Prakash et al., 2007). Full-scan MS experiments followed by data-dependent tandem MS/MS acquisition with ion trap or linear ion trap mass spectrometers are carried out to identify common metabolites whose... 

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