Lysine amidation

The H- and C-NMR spectroscopic data support the proposed primary structure of poly(Lys-25). The amide carbonyl resonances are particularly informative as these signals are well resolved in the C-NMR spectrum of poly(Lys-25) (Figure 4). An amide carbonyl resonance is observed at 174.9 ppm for poly(Lys-25) that does not appear in the spectrum of poly(Val-Pro-Gly-Val-Gly) [13]. The position and relative intensity of this resonance are consistent with a lysine amide carbonyl group within a peptide bond [14]. Moreover, the resonances of the amide carbonyl groups for other residues in the pentapeptide repeat are split due to the substitution of a lysine residue at position 4 in every fifth pentapeptide in Lys-25. In addition, the absence of splitting in amide carbonyl group of valine in position 4 (174.5 ppm) supports this assignment, as this residue is replaced by lysine in the fifth pentapeptide of the Lys-25 repeat. The presence of other resonances attributable to the lysine residue can be detected in the H- and C-NMR spectra of the Lys-25 polymer at levels commensurate with its... 

At the centre is enzyme 2 which binds the acetyl group through a lipoic acid-lysine amide. On the one side this acetyl group is delivered from pyruvate by the ministrations of thiamine pyrophosphate and enzyme T and on the other it is delivered to CoA as the free thiol ester. Enzyme 3 recycles... 

Factor XIII. Factor XIII circulates in the blood as a zymogen composed of two pairs of different polypeptide chains designated A and B. Inert Factor XIII has a molecular weight of 350,000 daltons and is converted to its active transglutaminase form in the presence of thrombin and calcium. Activated Factor XIII, Xllla, induces an irreversible amide exchange reaction between the y-glutamine and S-lysine side chains of adjacent fibrin... 

Caprolactam is an amide and, therefore, undergoes the reactions of this class of compounds. It can be hydrolyzed, Ai-alkylated, O-alkylated, nitrosated, halogenated, and subjected to many other reactions (3). Caprolactam is readily converted to high molecular weight, linear nylon-6 polymers. Through a complex series of reactions, caprolactam can be converted to the biologically and nutritionally essential amino acid L-lysine (10) (see Amino acids). 

Lipoic acid exists as a mixture of two structures a closed-ring disulfide form and an open-chain reduced form (Figure 18.33). Oxidation-reduction cycles interconvert these two species. As is the case for biotin, lipoic acid does not often occur free in nature, but rather is covalently attached in amide linkage with lysine residues on enzymes. The enzyme that catalyzes the formation of the lipoamide nk.2Lg c requires ATP and produces lipoamide-enzyme conjugates, AMP, and pyrophosphate as products of the reaction. 

Lipoamide Lipoic acid is linked through an amide bond to a lysine residue in the enzyme... 

Task (3) is more difficult. It uses a series of reagents each of which is capable of breaking only certain amide bonds. One of these reagents is the enzyme trypsin, which breaks only those bonds formed by the carboxyl groups in arginine and lysine. It would break the polypeptide... 

The LPS from Proteus species contain amino acids linked as amides to acidic sugars. Thus, L-lysine is linked by way of N-6 to a D-galacturonic acid residue (52) in the LPS from P. hauseri, but by way of N-2 to a D-glucu-ronic acid residue in the LPS from P. mirabilis 027. The latter LPS also contains L-alanine, linked to the carboxyl group of a D-galacturonic acid residue. 

Figure 17-5. Oxidative decarboxylation of pyruvate by the pyruvate dehydrogenase complex. Lipoic acid is joined by an amide link to a lysine residue of the transacetylase component of the enzyme complex. It forms a long flexible arm, allowing the lipoic acid prosthetic group to rotate sequentially between the active sites of each of the enzymes of the complex. (NAD nicotinamide adenine dinucleotide FAD, flavin adenine dinucleotide TDP, thiamin diphosphate.)...

In an attempt to design the p-turn-peptide-mimics, aspartic acid (an amino acid also known as aspartate) and lysine (an amino acid especially found in gelatin and casein) were attached to each amine group of 1,3-diaminoada-mantane in the form of amide bonds. The term p-turn refers to a peptide chain that forms a tight loop such that the carbonyl oxygen of one residue is hydrogen... 

Other supramolecular structures such as dendrimers have also been synthesized with zinc-containing porphyrins. Sixteen free base and sixteen zinc porphyrin units were added at the fifth generation of dendritic poly(L-lysine) and intramolecular fluorescence energy transfer was observed.823 Assembly of supramolecular arrays in the solid state has been achieved with the incorporation of an amide group for hydrogen bonding. Zinc meso-tetra(4-amidophenyl)porphyrin... 

Although the ROA spectra of typical /1-sheet proteins share some of the features observed in /3-sheet poly-L-lysine, there are also some differences, especially in the amide I region. This is because the /1-sheet in proteins tends to be twisted and irregular, whereas that in polypeptides tends to be extended, multistranded and relatively flat. 

Fig. 1. Comparison of amide V VCD for an identical sample of poly-L-lysine in D20 as measured on the UIC dispersive instrument (top) and on the ChirallRFT-VCD instrument (at Vanderbilt University, kindly made available by Prof. Prasad Polavarapu). Sample spectra were run at the same resolution for the same total time ( 1 h) in each case. The FTIR absorbance spectrum of the sample is shown below. VCD spectra are offset for sake of comparison. Each ideal baseline is indicated by a thin line, the scale providing a measure of amplitude. Noise can be estimated as the fluctuation in the baseline before and after the amide V, which indicates the S/N advantage of the single band dispersive measurement.

Fig. 4. Amide f FTIR (top) and VCD (bottom) of thermally further unfolded random coil peptide, oligo-L-lysine, at 5°C (solid line), 50°C (dashed) and 75°C (dash-dot). Low temperature results reflect the polymer spectrum (Fig. 2, bottom), but with somewhat reduced intensity. Higher temperatures result in an IR frequency shift and loss of VCD amplitude, indicating a loss of structure. Measured amplitudes shown. Reprinted from Keiderling, T. A., Silva, R. A. G. D., Yoder, G., and Dukor, R. K. (1999b). Bioorg. Med. Chem. 7, 133-141. 1999, with permission from Elsevier Science.

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