Kinetically effective site isolation

The results obtained showed, again, that the form of the rate equations and the values of their constants, obtained by the study of isolated reactions, are valid also in the coupled system. This was also confirmed by the observed agreement between the calculated and the experimental integral data (94)- Kinetic results and the analysis of the effect of reaction products revealed that adsorption of the reaction components was competitive and that all the compounds involved in the three reactions were adsorbed on the same sites of the catalytic surface. 

The hydroxyl radical can also abstract a single electron from dG to generate the base radical cation (G ). In duplex DNA, the G " " will be stabilized by its delocalization into adjacent bases. Both calculations and kinetic measurements " indicate that GG sequences have a lower oxidation potential than an isolated G. Nucleo-bases on the 3 -side of G determine the extent of G formation, and here purines are more effective than pyrimidines at lowering the oxidation potential of G, which accounts for the GG effect and that GA sites are also reactive. ... 

In the presence of PPi, known to bind strongly to the enzyme active site (Section III,E), there was a weak protective effect. The experimental points fell in the shaded area of Fig. 6, and the data were analyzed with equations developed by Scrutton and Utter (45). The results of this treatment led to the conclusion that TNBS can react with both free enzyme and enzyme-PPi complex to cause catalytic inactivation the differences are only quantitative (45). Either TNBS can displace PP, from an active site lysine or TNBS modifies a different lysine, apart from the active site, and the presence of PPi on the enzyme partially protects against TNBS inactivation by some indirect mechanism. Unfortunately, as discussed above, this issue cannot be settled with these kinetic analyses. Furthermore, because all of the enzyme lysines are to some extent reactive with TNBS (Fig. 5), the single super-reactive lysine whose modification leads to inactivation cannot be isolated and identified, as, for example, in a particular peptide fragment. A variety of interpretations are possible, as discussed elsewhere (45). 

For the surface defect mechanism, using a HF derived kinetic Monte Carlo model, Radeke and Carter98 showed that H2 desorption from Si(100)-2 x 1 via isolated dihydrides (Figure 11c) follows first-order kinetics. They further showed that the concentration of defects on the surface has a profound effect on the desorption rate constant. Recent studies proposed the importance of step sites rather than terraces99. 

Studies of the molecular mechanism of transport of the carriers of the mitochondrial membrane can be divided into two categories. One includes kinetic studies and the other includes structural studies, which rely either on the availability of pure isolated carrier protein or involve careful and detailed studies of substrate specificity and the effects of minor modifications of substrate structure in an attempt to specify the structural requirements of the catalytic site. 

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