Isotopes effect in enzymic reactions

Solvent Kinetic Isotope Effects in Enzyme Reactions (See Also Section 11.4)... 

Solvent Kinetic Isotope Effects in Enzyme Reactions... 

Kinetic Isotope Effects in Enzymic Reactions J. H. Richards... 

Northrop DB. Steady-state analysis of kinetic isotope effects in enzymic reactions. Biochemistry 1975 14 2644-2651. 

W. W. Cleland, M. H. O Leary and D. B. Northrup (Eds.), Isotope Effects in Enzyme-catalyzed Reactions, University Park Press, Baltimore, 1977. 

Abstract This chapter introduces the basic principles used in applying isotope effects to studies of the kinetics and mechanisms of enzyme catalyzed reactions. Following the introduction of algebraic equations typically used for kinetic analysis of enzyme reactions and a brief discussion of aqueous solvent isotope effects (because enzyme reactions universally occur in aqueous solutions), practical examples illustrating methods and techniques for studying enzyme isotope effects are presented. Finally, computer modeling of enzyme catalysis is briefly discussed. 

In the following year, Cleland and his coworkers reported further and more emphatic examples of the phenomenon of exaltation of the a-secondary isotope effects in enzymic hydride-transfer reactions. The cases shown in Table 1 for their studies of yeast alcohol dehydrogenase and horse-liver alcohol dehydrogenase would have been expected on traditional grounds to show kinetic isotope effects between 1.00 and 1.13 but in fact values of 1.38 and 1.50 were found. Even more impressively, the oxidation of formate by NAD was expected to exhibit an isotope effect between 1.00 and 1/1.13 = 0.89 - an inverse isotope effect because NAD" was being converted to NADH. The observed value was 1.22, normal rather than inverse. Again the model of coupled motion, with a citation to Kurz and Frieden, was invoked to interpret the findings. 

Cook, P.F., Oppenheimer, N.J. and Cleland, W.W. (1981). Secondary deuterium and nitrogen-15 isotope effects in enzyme-catalyzed reactions. Chemical mechanism of liver alcohol dehydrogenase. Biochemistry 20, 1817-1825... 

Such considerations raise the concept of the intrinsic kinetic isotope effect—the effect of isotopic substitution on a specific step in an enzyme-catalyzed reaction. The magnitude of an intrinsic isotope effect may not equal the magnitude of an isotope effect on collective rate parameters such as Vmax or Emax/ m, unless the isotopi-cally sensitive step is the rate-limiting or rate-contributing step. To tackle this problem, Northrop extended the kinetic theory for primary isotope effects in enzyme-catalyzed reactions. His approach can be illustrated with the following example of a one-substrate/two-intermedi-ate enzyme-catalyzed reaction ... 

A term used in the study of isotope effects in enzyme-catalyzed reactions, namely (equivalent to... 

Northrop, D. B., in Isotope Effects in Enzyme-Catalyzed Reactions, Cleiand, W. W., O Leary, M. H., Northrop,... 

Cleland, W. W. (1991) Multiple isotope effects in enzyme-catalyzed reactions, in Enzyme Mechanism from Isotope Effects, Cook, P. F. (Ed.), pp. 247-268, CRC Press, Boca Raton, FI. 

The kinetic expression for observed isotope effects is the ratio of both entire rate equations describing the disappearance of hydrogen and deuterium substrates. The isotopically sensitive step appears in multiple terms and cannot be factored out. In order to achieve factoring and subsequent simplification to useful kinetic equations, it is necessary to examine the Umits of rate equations at low and high substrate concentrations, where enzyme reactions approach first-order and zero-oider kinetics, respectively. To understand this, we must consider how isotope effects in bisubstrate reactions are measured. 

Major DT, Gao J (2007) An integrated path integral and free-energy perturbation-umbrella sampling method for computing kinetic isotope effects of chemical reactions in solution and in enzymes. J Chem Theory Comput 3 949—960... 

Ionic dissociation of carbon-carbon a-bonds in hydrocarbons and the formation of authentic hydrocarbon salts, 30, 173 Ionization potentials, 4, 31 Ion-pairing effects in carbanion reactions, 15, 153 Ions, organic, charge density-NMR chemical shift correlations, 11, 125 Isomerization, permutational, of pentavalent phosphorus compounds, 9, 25 Isotope effects and quantum tunneling in enzyme-catalyzed hydrogen transfer. 

Truhlar, D. G. Variational transition state theory and multidimensional tunneling for simple and complex reactions in the gas phase, solids, liquids, and enzymes, in Kohen, A. and Limbach, H. H., Eds. Isotope Effects in Chemistry and Biology. CRC Press/Taylor Francis, Boca Raton, FL (2006), pp. 579-619. 

If the overall reaction rate is controlled by step three (k3) (i.e. if that is the rate limiting step), then the observed isotope effect is close to the intrinsic value. On the other hand, if the rate of chemical conversion (step three) is about the same or faster than processes described by ks and k2, partitioning factors will be large, and the observed isotope effects will be smaller or much smaller than the intrinsic isotope effect. The usual goal of isotope studies on enzymatic reactions is to unravel the kinetic scheme and deduce the intrinsic kinetic isotope effect in order to elucidate the nature of the transition state corresponding to the chemical conversion at the active site of an enzyme. Methods of achieving this goal will be discussed later in this chapter. 

Carbon kinetic isotope effects on enzyme-catalyzed decarboxylations are among the most intensively studied enzyme reactions. This is because of the central role that carbon dioxide plays in plant metabolism and also because precise kinetic measurements are relatively easy to obtain since the carbon dioxide liberated in the reaction can be immediately analyzed using isotope ratio mass spectrometry. 

Just as in the preceding examples, early indications of tunneling in enzyme-catalyzed reactions depended on the failure of experiments to conform to the traditional expectations for kinetic isotope effects (Chart 3). Table 1 describes experimental determinations of -secondary isotope effects for redox reactions of the cofactors NADH and NAD. The two hydrogenic positions at C4 of NADH are stereochemically distinct and can be labeled individually by synthetic use of enzyme-catalyzed reactions. In reactions where the deuterium label is not transferred (see below), an... 

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