Inhibition mechanisms, enzyme kinetics

Mechanisms of Enzyme Action, Use of Product Inhibition and Other Kinetic Methods in the Study of (Walter). Mechanisms of Organic Electrode Reactions (Elving Pullman). ... 

Thereafter, a reference text such as Enzyme Kinetics (Segel, 1993) should be consulted to determine whether or not the proposed mechanism has been described and characterized previously. For the example given, it would be found that the proposed mechanism corresponds to a system referred to as partial competitive inhibition, and an equation is provided which can be applied to the experimental data. If the data can be fitted successfully by applying the equation through nonlinear regression, the proposed mechanism would be supported further secondary graphing approaches to confirm the mechanism are also provided in texts such as Enzyme Kinetics, and values could be obtained for the various associated constants. If the data cannot be fitted successfully, the proposed reaction scheme should be revisited and altered appropriately, and the whole process repeated. 

MULTISUBSTRATE SYSTEMS. Wong and Hanes were probably among the first to suggest that alternative substrates may be useful in mechanistic studies. Fromm s laboratory was the first to use and extend the theory of alternative substrate inhibition to address specific questions about multisubstrate enzyme kinetic mechanisms. Huang demonstrated the advantages of a constant ratio approach when dealing with alternative substrate kinetics. 

Inhibition may be incorporated into the mechanism of micellar catalysis in the same way it is handled in enzyme kinetics. Representing the inhibitor by /, we can revise Reaction (G) as follows ... 

A substrate L-benzoyl arginine /)-nitroanilide hydrochloride was hydrolyzed by trypsin, with inhibitor concentrations of 0, 0.3, and 0.6 mmol 1 T The hydrolysis rates obtained are listed in Table 3.3 [5]. Determine the inhibition mechanism and the kinetic parameters (A", and /Cj) of this enzyme... 

The quantitative study of catalysis by enzymes, i.e., the study of enzyme kinetics, is a highly developed branch of biochemistry. It is one of our most important means of learning about the mechanisms of catalysis at the active sites of enzymes.1 13a By determining rate constants k under a variety of conditions we can learn just how fast an enzyme can act, how tightly it binds its substrates to form the enzyme-substrate (ES) complexes essential to catalysis, how specific it is with respect to substrate structure, and how it is affected by compounds that inhibit or activate the catalysis. 

This mechanism is important for compounds that lack sufficient lipid solubility to move rapidly across the membrane by simple diffusion. A membrane-associated protein is usually involved, specificity, competitive inhibition, and the saturation phenomenon and their kinetics are best described by Michaelis-Menton enzyme kinetic models. Membrane penetration by this mechanism is more rapid than simple diffusion and, in the case of active transport, may proceed beyond the point where concentrations are equal on both... 

The primary considerations in studies of inhibition mechanisms are reversibility and selectivity. The inhibition kinetics of reversible inhibition give considerable insight into the reaction mechanisms of enzymes and, for that reason, have been well studied. In general, reversible inhibition involves no covalent binding, occurs rapidly, and can be reversed by dialysis or, more rapidly, by dilution. Reversible inhibition is usually divided into competitive inhibition, uncompetitive inhibition, and noncompetitive inhibition. Because these types are not rigidly separated, many intermediate classes have been described. 

As for deaminase, the kinetic analysis suggests a partial mixed-type inhibition mechanism. Both the Ki value of the inhibitor and the breakdown rate of the enzyme-substrate-inhibitor complex are dependent on the chain length of the PolyP, thus suggesting that the breakdown rate of the enzyme-substrate-inhibitor complex is regulated by the binding of Polyphosphate to a specific inhibitory site (Yoshino and Murakami, 1988). More complicated interactions were observed between PolyP and two oxidases, i.e. spermidine oxidase of soybeen seedling and bovine serum amine oxidase. PolyP competitively inhibits the activities of both enzymes, but may serve as an regulator because the amino oxydases are also active with the polyamine-PolyP complexes (Di Paolo et al., 1995). 

Incubation of AChE with onchidal resulted in the production of acetate, demonstrating that onchidal was a substrate for AChE, and approximately 3250 mol of onchidal was hydrolyzed/mol of enzyme irreversibly inhibited. Organophosphate and carbamate inhibitors of AChE have partition ratios (mol of toxin hydrolyzed/mol of enzyme irreversibly inhibited) that approach unity. Therefore, the relatively high partition ratio for onchidal suggests that the mechanism of inhibition utilized by onchidal may be distinctly different from other irreversible inhibitors (Walsh, 1984). The rate of hydrolysis of onchidal (Acat) was 325 min this value is relatively slow suggesting that onchidal is not a very good substrate. The ability of AChE to hydrolyze onchidal raised the question of whether inhibition of enzyme activity resulted from onchidal itself or from a product of the enzymatic hydrolysis of onchidal. Enzyme kinetics revealed that onchidal was unable to completely inhibit higher concentrations of AChE. From the experiments performed by Abramson et al. (1989), onchidal was in molar excess and was completely hydrolyzed. Thus,... 

This article describes various approaches to inhibition of enzyme catalysis. Reversible inhibition includes competitive, uncompetitive, mixed inhibition, noncompetitive inhibition, transition state, and slow tight-binding inhibition. Irreversible inhibition approaches include affinity labeling and mechanism-based enzyme inhibition. The kinetics of the various inhibition approaches are summarized, and examples of each type of Inhibition are presented. 

Enzyme kinetics is an important tool for assaying enzyme activities and for determining enzyme mechanisms. Although other techniques can provide useful information on enzyme mechanisms, the kinetics has to be the ultimate arbiter because it looks at the reaction while it is taking place. Initial velocity patterns, inhibition patterns, patterns of isotopic exchange, pH profiles, and isotope effects are all kinetic tools that allow one to determine kinetic mechanisms, chemical mechanisms, and transition state structures. 

Enzyme Inhibition, Mechanisms of Enzyme Inhibition, Tools to Study Enzyme Kinetics, Techniques to Study Kinetic Isotope Effects Enzyme Catalysis, Chemistry of... 

Any substance that reduces the velocity of an enzyme caialyzed reaction can be considered to be an "inhibitor. The inhibition of enzyme activity is one of the major regulatory devices of living cells, and one of the most important diagnostic procedures of the enzymologisL Inhibition studies often tell us something about the specificity of an enzyme, the physical and chemical architecture of the active site, and the kinetic mechanism of the reaction. In OUT everyday life, enzyme inhibitors can be found masquerading as drugs, antibiotics, preservatives, poisons, and toxins. In this section we examine a few simple types of enzyme inhibitors. 

Hexokinase does not yield parallel reciprocal plots, so the Ping Pong mechanism can be discarded. However, initial velocity studies alone will noi discriminate between the rapid equilibrium random and steady-state ordered mechanisms. Both yield ihe same velocity equation and families of intersecting reciprocal plots. Other diagnostic procedures must be used (e.g., product inhibition, dead-end inhibition, equilibrium substrate binding, and isotope exchange studies). These procedures are described in detail in the author s Enzyme Kinetics behavior and Analysis of Rapid Equilibrium and Steady-State Enzyme Systems, Wiley-Interscience (1975),... 

The mode of action of inhibitors can be divided into two groups reversible or irreversible. A detailed explanation can be found in textbooks of enzyme kinetics and assays [345]. The critical aspects and kinetics of both mechanisms are summarized in Table 10.8. In brief, in all cases the presence of a substrate is a prerequisite and it has to be added at a concentration that does not hmit the reaction rate of the non-inhibited... 

Kinetics ind cheiracteristics of enzyme s inhibition mechanisms (eifter Eef. [346])... 

Enzyme inhibition data are often presented as IC50, the concentration of the inhibitor to cause 50 percent inhibition at one chosen substrate concentration Kt, the inhibition constant (dissociation constant from the inhibitor-enzyme complex) determined by enzyme kinetic analysis (e.g., Dixon plot) and /Cin lcl, the time-dependent inhibition constant for mechanism-based inhibitors. IC50 values can be estimated from the study described earlier. A positive inhibition, defined as dose-dependent inhibition, with the inhibited activity lower than 50 percent of that of the negative control, will require further experimentation to define Ki for a better evaluation of in vivo inhibitory potential. Further, a study to determine Klwul may be performed to evaluate if the inhibitor acts via covalent binding to the active site of the enzyme, leading to time-dependent irreversible inhibition. 

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