Hydrolases and other enzymes

(1941). Verdoperoxidase A ferment isolated from leukocytes. Acta Chettt. 

Almeida, R. P., Melchior, M., Campanelli, D., Nathan, C., Gabay, J. E. (1991). Complementary DNA sequence of human neutrophil azurocidin, an antibiotic with extensive homology to serine proteases. Biochem. Biophys. Res. Commun. 177, 688-95. 

Bainton, D. F. (1980). The cells of inflammation A general view. In The Cell Biology of Inflammation, vol. 2 (Weissman, G., ed.), pp. 1-25, Elsevier/North Holland, New York. 

Demetri, G. D., Griffin, J. D. (1991). Granulocyte colony-stimulating factor and its receptor. Blood 78,2791-808. 

Elsbach, P., Weiss, J. (1983). A reevaluation of the roles of the 02-dependent and 02-independent microbicidal systems of phagocytes. Rev. Infect. Dis. 5, 843-53. 

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A different application of visible microscopy was pioneered by Gomori. In 1941 he showed that alkaline phosphatase could be specifically located by its hydrolysis of soluble phosphate esters (initially glycerophosphate). If calcium ions were present in the medium in which the sections were incubated, insoluble calcium phosphate precipitated as a result of the action of the hydrolase. The site of the precipitate could be visualized if cobalt or lead salts were subsequently added to replace calcium and the sections exposed to hydrogen sulfide. In principle many hydrolases and other enzymes could be studied using the appropriate substrates and precipitants. It was important to ensure that the products of the enzyme reactions did not diffuse from the sites where the enzymes were located. It was also essential that the reagents could reach the enzyme site. 

VI. Vaes, G., and Jacques, P., Studies on bone enzymes. The assay of acid hydrolases and other enzymes in bone tissue. Biochem. J. 97, 380-388 (1965). 

Increases in levels of glycan hydrolases and other enzymes. (11, )... 

The microsomal fraction consists mainly of vesicles (microsomes) derived from the endoplasmic reticulum (smooth and rough). It contains cytochrome P450 and NADPH/cytochrome P450 reductase (collectively the microsomal monooxygenase system), carboxylesterases, A-esterases, epoxide hydrolases, glucuronyl transferases, and other enzymes that metabolize xenobiotics. The 105,000 g supernatant contains soluble enzymes such as glutathione-5-trans-ferases, sulfotransferases, and certain esterases. The 11,000 g supernatant contains all of the types of enzyme listed earlier. 

Small molecule or peptide substrates can also be used to profile protease and other enzyme activities. Salisbury et al. described a protease-substrate microarray in which the carboxyl end of the peptide substrates was conjugated to 7-amino-4-car-bamoylmethyl coumarin, a fluorogenic compound. The conjugate was non-fluores-cent when the electron-donating group on the coumarin was attached to the peptide. Upon proteolysis, the peptide was released and the microarray spot fluoresced. Zhu et al. demonstrated that small molecule microarrays could be used to detect enzyme activities of epoxide hydrolases and phosphatases. 

Hydrolases represent a significant class of therapeutic enzymes [Enzyme Commission (EC) 3.1—3.11] (14) (Table 1). Another group of enzymes with pharmacological uses has budt-ia cofactors, eg, in the form of pyridoxal phosphate, flavin nucleotides, or zinc (15). The synthases, and other multisubstrate enzymes that require high energy phosphates, are seldom available for use as dmgs because the required co-substrates are either absent from the extracellular space or are present ia prohibitively low coaceatratioas. 

Adenosine deaminase (ADA) is an amino hydrolase that catalyzes the deamination of adenosine and 2 -deoxyadenosine to inosine and 2 -deoxyinosine, respectively. High activity of ADA is seen in thymus and other lymphoid tissues. ADA has been shown in many different physical forms. A small form of the enzyme predominates in the spleen, stomach, and red blood cells, whereas the large form predominates in the kidney, liver, and skin fibroblasts. The small form of the catalytic subunit can be converted to the large form by complexing with a protein termed binding protein or complexing protein. 

The matrix metalloprotease (MMP) family of zinc hydrolases are thought to play important roles in extracellular tissue remodeling in angiogenesis and other normal physiological processes, in some inflammatory processes and in metastatic processes in cancer. Like the zinc carboxypeptidases, the MMPs also utilize a zinc-coordinated water molecule to initiate attack on the scissile amide bond of protein substrates. These enzymes are synthesized by the ribosome in a latent form composed of a catalytic domain and an N-terminal extension, referred to as the prodomain the latent, or inactive form of the enzyme is referred to as a zymogen or... 

Based on reactions they catalyze, enzymes can be broadly classified into six major categories (Table 1.1) [1], It was estimated that about 60% of biotransformations currently rely on the use of hydrolases, followed by 20% of oxidoreductases [2]. On the other hand, some of the C—C bond-forming and oxygenation enzymes catalyze reactions with very high reaction efficiency and very low waste generation, underlining the potential of emerging enzymes. 

Other enzymes have also been immobilized on CNTs for the construction of electrochemical biosensors. Deo et al. [115] have described an amperometric biosensor for organophosphorus (OP) pesticides based on a CNT-modified transducer and OP hydrolase, which is used to measure as low as 0.15 pM paraoxon and 0.8 pM parathion with... 

We have already seen the diversity of function in the lyases, hydrolases and oxidoreductases. Several other types of zinc coordination are found in a number of other enzymes, illustrated in Figure 12.8. These include enzymes with the coordination motif [(His)2(Cys) Zn2+-OH2], illustrated by the lysozyme of bacteriophage T7 this group also includes a peptidyl deformylase. 

S. Except for oxido-reductases, transferases, and hydrolases, most ligases (enzymes that catalyze bond formation) are entirely substrate specific. Thus, fumarate hydratase (or fumarase) reversibly and stereospecifically adds water to fumaric acid to produce (S)-( — )-malic acid only (8) (Figure 1), and another enzyme, mesaconase, adds water to mesaconic acid to form (+ )-citramalic acid (9) (Figure 2). Although no extensive studies are available, it appears that neither fumarase nor mesaconase will add water stereospecifically to any other a,(3-unsaturated acid. 

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