Hydration shell

In general, anions are less strongly hydrated than cations, but recent neutron diffraction data have indicated that even around the halide ions there is a well defined primary hydration shell of water molecules, which, in... 

The complete hydration shell of the proton consists of both the central FI O unit and fiirther associated water molecules mass spectrometric evidence would suggest that a total of four water molecules fomr the actual FIgOj unit, givmg a hydration number of four for the proton. Of course, the measurement of this number by... 

The hydration shell is formed with the increasing of the water content of the sample and the NA transforms from the unordered to A- and then to B form, in the case of DNA and DNA-like polynucleotides and salt concentrations similar to in vivo conditions. The reverse process, dehydration of NA, results in the reverse conformational transitions but they take place at the values of relative humidity (r.h.) less than the forward direction [12]. Thus, there is a conformational hysteresis over the hydration-dehydration loop. The adsorption isotherms of the NAs, i.e. the plots of the number of the adsorbed water molecules versus the r.h. of the sample at constant temperature, also demonstrate the hysteresis phenomena [13]. The hysteresis is i( producible and its value does not decrease for at least a week. 

Taking into account the hydration shell of the NA and the possibility of the water content changing we are forced to consider the water -I- nucleic acid as an open system. In the present study a phenomenological model taking into account the interdependence of hydration and the NA conformation transition processes is offered. In accordance with the algorithm described above we consider two types of the basic processes in the system and thus two time intervals the water adsorption and the conformational transitions of the NA, times of the conformational transitions being much more greater... 

The expressions for the changes in the free energy of the hydration shell of the NA (per NA units mole) in the U A and A— B conformational transitions should be written in the form ... 

The Langevin model has been employed extensively in the literature for various numerical and physical reasons. For example, the Langevin framework has been used to eliminate explicit representation of water molecules [22], treat droplet surface effects [23, 24], represent hydration shell models in large systems [25, 26, 27], or enhance sampling [28, 29, 30]. See Pastor s comprehensive review [22]. 

The ideas of Frank, Evans and Kauzmann had a profound influence on the way chemists thought about hydrophobic effects in the decades that followed However, after the study of the hydrophobic hydration shell through computer simulations became feasible, the ideas about the hydrophobic hydration gradually changed. It became apparent that the hydrogen bonds in the hydrophobic hydration shell are nof or only to a minor extent, stronger than in normal water which is not compatible with an iceberg character of the hydration shell. 

As is suggested frequently , this term might well result from the restriction of the hydrogen bonding possibilities experienced by the water molecules in the first hydration shell. For each individual water molecule this is probably a relatively small effect, but due to the small size of the water molecules, a large number of them are entangled in the first hydration shell, so that the overall effect is appreciable. This theory is in perfect agreement with the observation that the entropy of hydration of a nonpolar molecule depends linearly on the number of water molecules in the first hydration shell ". ... 

In the traditional view hydrophobic interactions are assumed to be driven by the release of water molecules from the hydrophobic hydration shells upon the approach of one nonpolar solute to another. Although the ideas about the structure of the hydrophobic hydration shell have changed, this view is essentially unaltered... 

The distinction between pairwise and bulk hydrophobic interactions is often made, although some authors doubt the existence of an intrinsic difference between the two ". Pairwise hydrophobic interactions denote the interactions behveen two isolated nonpolar solutes in aqueous solution. They occur in the regime where no aggregation takes place, hence below the critical aggregation concentration or solubility limit of the particular solute. If any breakdown of the hydrophobic hydration shell occurs, it will be only transient. 

The theory predicts high stabilities for hard acid - hard base complexes, mainly resulting from electrostatic interactions and for soft acid - soft base complexes, where covalent bonding is also important Hard acid - soft base and hard base - soft acid complexes usually have low stability. Unfortunately, in a quantitative sense, the predictive value of the HSAB theory is limited. Thermodynamic analysis clearly shows a difference between hard-hard interactions and soft-soft interactions. In water hard-hard interactions are usually endothermic and occur only as a result of a gain in entropy, originating from a liberation of water molecules from the hydration shells of the... 

Finally, also size and shape of the nonpolar solute seem to influence the formation of hydrophobic hydration shells. Particularly the curvature of the nonpolar surface has been suggested to be... 

The observation that in the activated complex the reaction centre has lost its hydrophobic character, can have important consequences. The retro Diels-Alder reaction, for instance, will also benefit from the breakdown of the hydrophobic hydration shell during the activation process. The initial state of this reaction has a nonpolar character. Due to the principle of microscopic reversibility, the activated complex of the retro Diels-Alder reaction is identical to that of the bimoleciilar Diels-Alder reaction which means this complex has a negligible nonpolar character near the reaction centre. O nsequently, also in the activation process of the retro Diels-Alder reaction a significant breakdown of hydrophobic hydration takes placed Note that for this process the volume of activation is small, which implies that the number of water molecules involved in hydration of the reacting system does not change significantly in the activation process. 

In the case of the retro Diels-Alder reaction, the nature of the activated complex plays a key role. In the activation process of this transformation, the reaction centre undergoes changes, mainly in the electron distributions, that cause a lowering of the chemical potential of the surrounding water molecules. Most likely, the latter is a consequence of an increased interaction between the reaction centre and the water molecules. Since the enforced hydrophobic effect is entropic in origin, this implies that the orientational constraints of the water molecules in the hydrophobic hydration shell are relieved in the activation process. Hence, it almost seems as if in the activated complex, the hydrocarbon part of the reaction centre is involved in hydrogen bonding interactions. Note that the... 

Fig. 10 shows the radial particle densities, electrolyte solutions in nonpolar pores. Fig. 11 the corresponding data for electrolyte solutions in functionalized pores with immobile point charges on the cylinder surface. All ion density profiles in the nonpolar pores show a clear preference for the interior of the pore. The ions avoid the pore surface, a consequence of the tendency to form complete hydration shells. The ionic distribution is analogous to the one of electrolytes near planar nonpolar surfaces or near the liquid/gas interface (vide supra). 

It is possible to indicate by thermodynamic considerations 24,25,27>, by spectroscopic methods (IR28), Raman29 , NMR30,31 ), by dielectric 32> and viscosimetric measurements 26), that the mobility of water molecules in the hydration shell differs from the mobility in pure water, so justifying the classification of solutes in the water structure breaker and maker, as mentioned above. 

As mentioned above, water structure in reversed micelles deviates considerably from the structure in the bulk-phase. Therefore, the hydration shell of macromolecules entrapped in reversed micellar systems should be changed and thus also their conformation. According to the results of several authors this is indeed the case. 

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