Heterocycles adenine

Purines — These molecules have basic skeletons of purine heterocycles. Adenine and guanine, intrinsic components of nucleic acids, are also ubiquitous molecules. Related molecules are isoguanine, xanthine, and uric acid. 

The TV-glycoside of D-ribose and the nitrogen heterocycle, adenine, is adenosine ... 

The bases found in RNA (ribonucleic acid) are the purine heterocyclics adenine (6-aminopurine) and guanine (2-amino-6-oxypurine) and their complementary pyrimidine bases uracil (2,4-dioxypyrimidine) and cytosine (2-oxy-4-aminopyrimidine), respectively (Section 1, Appendix). In RNA double-stranded duplexes adenine (A) base-pairs with uracil (U) via two hydrogen bonds (A=U) and guanine base-pairs with cytosine (C) via 3 hydrogen bonds (G=C). Adenine forms the nucleoside adenosine by an N-glycosidic link with the... 

A complex pyridinium derivative, nicotinamide adenine dinucleotide (NAD ) is an important biological oxidizing agent. The structure consists of a pyridine ring [derived from 3-pyridinecarboxylic (nicotinic) acid], two ribose molecules (Section 24-1) linked by a pyrophosphate bridge, and the heterocycle adenine (Section 26-9). 

Firefly luciferin is an exanple of an azole that contains a benzene ring fused to the five-rnernbered ring. Such structures are fairiy common. Another example is benzimidazole, present as a structural unit in vitfflnin B12. Some compounds related to benzimidazole include purine and its fflnino-substituted derivative adenine, one of the so-called heterocyclic bases found in DNA and RNA (Chapter 28). 

Another property of pyrimidines and purines is their strong absorbance of ultraviolet (UV) light, which is also a consequence of the aromaticity of their heterocyclic ring structures. Figure 11.8 shows characteristic absorption spectra of several of the common bases of nucleic acids—adenine, uracil, cytosine, and guanine—in their nucleotide forms AMP, UMP, CMP, and GMP (see Section 11.4). This property is particularly useful in quantitative and qualitative analysis of nucleotides and nucleic acids. 

It would not be too far fetched to state that life on this planet is totally dependent on two compounds based on the purine nucleus. Two of the bases crucial to the function of DNA and flNA—guanine and adenine—are in fact substituted purines. It is thus paradoxical that the lead for the development of medicinal agents based on this nucleus actually came from observations of the biologic activity of plant alkaloids containing that heterocyclic system, rather than from basic biochemistry. 

Samples of DNA isolated from different tissues of the same species have the same proportions of heterocyclic bases, but samples from different species often have greatly different proportions of bases. Human DNA, for example, contains about 30% each of adenine and thymine and about 20% each of guanine and cytosine. The bacterium Clostridium perfringens, however, contains about 37% each of adenine and thymine and only 13% each of guanine and cytosine. Note that in both examples the bases occur in pairs. Adenine and thymine are present in equal amounts, as are cytosine and guanine. Why ... 

Molecules of DNA consist of two complementary polynucleotide strands held together by hydrogen bonds between heterocyclic bases on the different strands and coiled into a double helix. Adenine and thymine form hydrogen bonds to each other, as do cytosine and guanine. 

Fujii, T. Saito, T. Terahara, N. The Dimroth rearrangement in the adenine series areview updated. Heterocycles 1998, 48, 359-390. 

Nucleotides can be linked together into oligonucleotides through a phosphate bridge at the 5 position of one ribose unit and the 3 position of another. The purine bases, adenine and guanine, have two heterocyclic rings, while the pyrimidines cytosine, thymine, and uracil have one. The structure of adenosine monophosphate is shown in Figure 11. 

In the early days of meteorite analysis, it was difficult to detect N-heterocycles later, the Murchison meteorite was shown to contain xanthine, hypoxanthine, guanine, adenine and uracil (about 1.3 ppm in total). This meteorite seems to contain various classes of basic and neutral N-heterocycles, as well as isomeric alkyl derivatives. 

In another study of the problem of the prebiotic adenine synthesis, Leslie Orgel concludes that, in spite of many uncertainties, the formation of these complex heterocyclic bases probably required three preconditions ... 

A number of molybdenum-containing hydroxylases catalyzing the first hydrox-ylation step of N-containing compounds have been characterized thoroughly (e.g., carbazole [314], quinoline [327], and indole [350]). The enzyme s redox-active has been described as a molybdenum ion site coordinated to a distinct pyranopterin cofactor (two different [2Fe2S] centers) and in most cases, flavin adenine dinucleotide centers. This active center transfers electrons from the N-heterocyclic substrate to an electron acceptor, which for many molybdenum hydroxylases is still unknown [350],... 

Grouped in this Section are the C-D-pentofuranosyl-imidazoles, -pyrazolopyrimidines, and -adenines. The last two analogs are positional isomers of formycin in which the heterocyclic moiety is attached to the sugar at an unnatural position. A rationale103 for the synthesis of this type of analog is of interest it was based on the possibility of a close structural similarity between a natural adenine nucleoside and synthetic analog with respect to available hydrogenbonding sites. 

Most coenzymes have aromatic heterocycles as major constituents. While enzymes possess purely protein structures, coenzymes incorporate non-amino acid moieties, most of them aromatic nitrogen het-erocycles. Coenzymes are essential for the redox biochemical transformations, e.g., nicotinamide adenine dinucleotide (NAD, 13) and flavin adenine dinucleotide (FAD, 14) (Scheme 5). Both are hydrogen transporters through their tautomeric forms that allow hydrogen uptake at the termini of the quinon-oid chain. Thiamine pyrophosphate (15) is a coenzyme that assists the decarboxylation of pyruvic acid, a very important biologic reaction (Scheme 6). 

Purines A series of heterocyclic compounds that are variously substituted in nature and are known also as purine bases. They include adenine and guanine, constituents of nucleic acids, as well as many alkaloids such as caffeine and theophylline. Uric add is the metabolic end product of purine metabolism. [NIH]... 

The bases are monocyclic pyrimidines (see Box 11.5) or bicyclic purines (see Section 11.9.1), and all are aromatic. The two purine bases are adenine (A) and guanine (G), and the three pyrimidines are cytosine (C), thymine (T) and uracil (U). Uracil is found only in RNA, and thymine is found only in DNA. The other three bases are common to both DNA and RNA. The heterocyclic bases are capable of existing in more than one tautomeric form (see Sections 11.6.2 and 11.9.1). The forms shown here are found to predominate in nucleic acids. Thus, the oxygen substituents are in keto form, and the nitrogen substituents exist as amino groups. 

Dimethyl sulfate is an effective methylating agent (see Section 7.13.1). Methylation of the purine rings in gnanine and adenine makes them susceptible to hydrolysis and snbseqnent rnptnre. This, in tnm, makes the glycosidic bond vnlnerable to attack, and the heterocycle is displaced from the phosphodiester. The phosphodiester bond can then cleaved by basic hydrolysis (aqueons piperidine). 

The bases that occur in nucleic acids are aromatic heterocyclic compounds derived from either pyrimidine or purine. Five of these bases are the main components of nucleic acids in all living creatures. The purine bases adenine (abbreviation Ade, not A ) and guanine (Gua) and the pyrimidine base cytosine (Cyt) are present in both RNA and DNA. In contrast, uracil (Ura) is only found in RNA. In DNA, uracil is replaced by thymine (Thy), the 5-methyl derivative of uracil. 5-methylcyto-sine also occurs in small amounts in the DNA of the higher animals. A large number of other modified bases occur in tRNA (see p. 82) and in other types of RNA. 

The condensation of various heterocycles (pyrimidine or purine) with allyl bromide has been effected in the presence of KI. This selectively afforded N-1 isomers with pyrimidines, but N-9, N-3 or N-9, N-7 isomer mixtures with purines (88MIP1 89MI12 91 Mil). Alkyl esters of 3-adenin-9-yl-2-hydroxypropanoic acids were reported as broad-spectrum antiviral agents (85JMC282). 

Purines (purine = 7//-imidazo [4,5-rf]pyrimidine, C5H4N4) and pteridines (pteridine = pyrazino [2,3-d]pyrimidine, C6FI4N4) are compounds consisting of two fused A-heterocyclic rings. Adenine and guanine are important purines. They are used, for example, as building blocks for nucleotides (see discussion below). Folic acid (a vitamin), methopterin, and methotrexate are typical pteridines. 

Remarkable acceleration has been observed for JV-sulfopropylation of heterocyclic compounds such as adenine using 13-propane sulfone (75) under microwave irradiation affording the N-sulfopropyl derivative 76, in 30 seconds and 95% yield <98TL9587>. 

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