Eukaryotes extracellular proteins

Defective proteins and those with characteristically short half-lives are generally degraded in both bacterial and eukaryotic cells by selective ATP-dependent cytosolic systems. A second system in vertebrates, operating in lysosomes, recycles the amino acids of membrane proteins, extracellular proteins, and proteins with characteristically long half-lives. 

SMART (Simple Modular Architecture Research Tool) [12-14] is a Web-based resource used for the annotation of protein domains and the analysis of domain architectures, with particular emphasis on mobile eukaryotic domains. Extensive annotation for each domain family is available, providing information relating to function, subcellular localization, phyletic distribution and tertiary structure. The January 2002 release has added more than 200 hand-curated domain models. This brings the total to over 600 domain families that are widely represented among nuclear, signalling and extracellular proteins. Annotation now includes links to the Online Mendelian Inheritance in Man (OMIM) database in cases where a human disease is associated with one or more mutations in a particular domain, (http //smart, embl-heidelberg. de/help/smart about. shtml)... 

Many other peptides are synthesized as proproteins that require modifications before attaining biologic activity. Many of the posttranslational modifications involve the removal of amino terminal amino acid residues by specific aminopeptidases. Collagen, an abundant protein in the extracellular spaces of higher eukaryotes, is synthesized as procollagen. Three procol-... 

B. brevis is not so well studied. It also shows low extracellular protease activity, and a protease-deficient strain is available [43]. High [44] and low [45] copy number plasmids are constructed for different levels of expression. Modification of signal sequences can enhance yields of eukaryotic proteins [46]. The yields can be up to 3 gL-1 media. 

In concluding this section, we stress again the novel dependence of the extracellular connective structures on chemistry, especially that of copper and iron using oxygen, and zinc proteins for hydrolysis, which did not and could not have taken place before more than one billion years ago. They arose mainly after the development of unicellular eukaryotes, and were dependent on additional environmental change. Even several external uses of calcium depend upon new oxidation of the side chains of proteins. 

Vesicular proteins and lipids that are destined for the plasma membrane leave the TGN sorting station continuously. Incorporation into the plasma membrane is typically targeted to a particular membrane domain (dendrite, axon, presynaptic, postsynaptic membrane, etc.) but may or may not be triggered by extracellular stimuli. Exocytosis is the eukaryotic cellular process defined as the fusion of the vesicular membrane with the plasma membrane, leading to continuity between the intravesicular space and the extracellular space. Exocytosis carries out two main functions it provides membrane proteins and lipids from the vesicle membrane to the plasma membrane and releases the soluble contents of the lumen (proteins, peptides, etc.) to the extracellular milieu. Historically, exocytosis has been subdivided into constitutive and regulated (Fig. 9-6), where release of classical neurotransmitters at the synaptic terminal is a special case of regulated secretion [54]. 

All eukaryotic cells possess an unspecialized exocytic pathway known as the constitutive secretion. Vesicle membranes in this pathway fuse with the plasma membrane without any extracellular signal. As noted above, proteins destined for the secretory pathway are sorted at the level of the TGN. Proteins to be transported to the plasma membrane are directed into a constitutive secretory pathway. 

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