Enzymes groups hydrolases

The normal zinc content of the body amounts to 20-30 mmol (1.3-2.0 g). The daily dietary requirement is 10-15 mg. In the blood, zinc is bound to tt2-macro-globulin, albumin or amino acids, and a small amount is also bound to transferrin. Zinc is crucial to a variety of enzyme reactions. This applies especially to the liver. More and more attention has therefore been paid to the role of zinc in liver disease in recent years. Six enzyme groups (hydrolases, isomerases, ligases, lyases, oxidore-ductases and transferases) with a total of 35 zinc metal-loenzymes are listed. (98) Almost 200 enzyme reactions in the body are zinc-dependent ... 

Enzymes catalyzing the hydrolysis of esters are termed esterases. They belong to a larger group of enzymes termed hydrolases, which can cleave a variety of chemical bonds by hydrolytic attack. In the classification of hydrolases of the International Union of Biochemistry (lUB), the following categories are recognized ... 

The nickel enzymes covered in this article can be divided into two groups redox enzymes and hydrolases. The five Ni redox enzymes are hydrogenase, CO dehydrogenase (CODH), acetyl-CoA synthase (ACS), methyl-Coenzyme M reductase (MCR), and superoxide dismutase (SOD). Glyoxalase-I and urease are Ni hydrolases. Ni proteins that are not enzymes are not covered, because they have been recently reviewed. These include regulatory proteins (NikR) and chaperonins and metal uptake proteins (CooJ, CooE, UreE, and ABC transporters). A recent crystal structure of NikR, shown in Figure l(i), is a notable recent achievement in this area. ... 

Note There is a systematic nomenclature for classifying the enzymes by function, as follows oxidoreductases involve oxidation-reduction reactions transferases involve the transfer of functional groups hydrolases involve hydrolysis reactions with water lyases involve the elimination of a group to form double bonds isomerases involve isomerization to a different structure but with the same chemical composition ligases involve the formation of a chemical bond simultaneously with ATP hydrolysis. There are in turn subclasses and sub-subclasses, and a subclass that... 

The functions of the guanidine-modifying enzymes further subdivide the family into three distinct groups hydrolases, dihydrolases, and amidinotransferases. Hydrolases catalyze the hydrolysis of guanidine derivatives to form ureido compounds, whereas dihydrolases catalyze a hydrolysis reaction to yield a primary amine, ammonia, and bicarbonate (or carbon dioxide). The amidinotransferases transfer an amidino group from one substrate to an amine. Although these are distinct reactions, they are characterized by common structural and mechanistic themes. 

Analogs were prepared through total chemical synthesis in which the unstable epoxide was replaced with a cyclopropyl group (4). This afforded compounds that were not subject to epoxide metabolizing enzymes, epoxide hydrolase, and glutathione transferase. We called these compounds PBT (PaceBioAcTive compounds). The PBT competed with the native compounds in binding to neutrophil... 

As a group, hydrolases are used more often in polymers than all other enzymes. Many hydrolases can accept different substrates and have utility for a variety of reactions. Their popularity is assisted by the commercial availability of many hydrolases and their relatively lower prices. 

Hydrolases represent a significant class of therapeutic enzymes [Enzyme Commission (EC) 3.1—3.11] (14) (Table 1). Another group of enzymes with pharmacological uses has budt-ia cofactors, eg, in the form of pyridoxal phosphate, flavin nucleotides, or zinc (15). The synthases, and other multisubstrate enzymes that require high energy phosphates, are seldom available for use as dmgs because the required co-substrates are either absent from the extracellular space or are present ia prohibitively low coaceatratioas. 

Enzymes are classified into six categories depending on the kind of reaction they catalyze, as shown in Table 26.2. Oxidoreductases catalyze oxidations and reductions hansferases catalyze the transfer of a group from one substrate to another hydrolases catalyze hydrolysis reactions of esters, amides, and related substrates lyases catalyze the elimination or addition of a small molecule such as H2O from or to a substrate isomerases catalyze isomerizalions and ligases catalyze the bonding together of two molecules, often coupled with the hydrolysis... 

Figure 3. Mitochondrial fatty acid oxidation. Long-chain fatty acids are converted to their CoA-esters as described in the text, and their fatty-acyl-groups transferred to CoA in the matrix by the concerted action of CPT 1, the acylcarnitine/carnitine exchange carrier and CPT (A) as described in the text. Medium-chain and short-chain fatty acids (Cg or less) diffuse directly into the matrix where they are converted to their acyl-CoA esters by a acyl-CoA synthase. The mechanism of p-oxidation is shown below (B). Each cycle of P-oxidation removes -CH2-CH2- as an acetyl unit until the fatty acids are completely converted to acetyl-CoA. The enzymes catalyzing each stage of P-oxidation have different but overlapping specificities. In muscle mitochondria, most acetyl-CoA is oxidized to CO2 and H2O by the citrate cycle (Figure 4) some is converted to acylcamitine by carnitine acetyltransferase (associated with the inner face of the inner membrane) and exported from the matrix. Some acetyl-CoA (if in excess) is hydrolyzed to acetate and CoASH by acetyl-CoA hydrolase in the matrix. Enzymes ...

In all the reported examples, the enzyme selectivity was affected by the solvent used, but the stereochemical preference remained the same. However, in some specific cases it was found that it was also possible to invert the hydrolases enantioselectivity. The first report was again from iQibanov s group, which described the transesterification of the model compound (13) with n-propanol. As shown in Table 1.6, the enantiopreference of an Aspergillus oryzae protease shifted from the (l)- to the (D)-enantiomer by moving from acetonitrile to CCI4 [30]. Similar observations on the inversion of enantioselectivity by switching from one solvent to another were later reported by other authors [31]. 

The mechanism for the lipase-catalyzed reaction of an acid derivative with a nucleophile (alcohol, amine, or thiol) is known as a serine hydrolase mechanism (Scheme 7.2). The active site of the enzyme is constituted by a catalytic triad (serine, aspartic, and histidine residues). The serine residue accepts the acyl group of the ester, leading to an acyl-enzyme activated intermediate. This acyl-enzyme intermediate reacts with the nucleophile, an amine or ammonia in this case, to yield the final amide product and leading to the free biocatalyst, which can enter again into the catalytic cycle. A histidine residue, activated by an aspartate side chain, is responsible for the proton transference necessary for the catalysis. Another important factor is that the oxyanion hole, formed by different residues, is able to stabilize the negatively charged oxygen present in both the transition state and the tetrahedral intermediate. 

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