Enzyme mimic catalysis hydrolysis

DNA binds and reacts with carcinogenic and similar compounds which alkylate it through cationic intermediates, in some cases extraordinarily fast 1371 and can in the process catalyse the hydrolysis of some substrates, like the bay-region diol epoxides derived from benzpyrene.1381 In the context of enzyme mimics these reactions are primarily of curiosity value DNA lacks the conformational flexibility and the chemical functionality to offer the prospect of efficient catalysis for ordinary reactions. 

Artificial enzymes with metal ions can also hydrolyze phosphate esters (alkaline phosphatase is such a natural zinc enzyme). We examined the hydrolysis of p-nitro-phenyfdiphenylphosphate (29) by zinc complex 30, and also saw that in a micelle the related complex 31 was an even more effective catalyst [118]. Again the most likely mechanism is the bifunctional Zn-OH acting as both a Lewis acid and a hydroxide nucleophile, as in many zinc enzymes. By attaching the zinc complex 30 to one or two cyclodextrins, we saw even better catalysis with these full enzyme mimics [119]. A catalyst based on 25 - in which a bound La3+ cooperates with H202, not water - accelerates the cleavage of bis-p-nitrophenyl phosphate by over 108-fold relative to uncatalyzed hydrolysis [120]. This is an enormous acceleration. 

Phosphate esters can be cleaved by template catalysts, especially those with cyclodextrin binding groups and linked catalytic groups. Catalysis of the hydrolysis of a bound cyclic phosphate by ribonuclease mimics has been extensively studied [92-98], as has catalysis by enzyme mimics carrying bound metal ions [99-102]. 

Classically, the bell-shaped dependence of rate of the enzymic reaction on pH has been attributed to general acid and base catalysis by the two histidine residues in the active site, His-12 and His-119 (66). Support for this explanation based on the kinetic properties of a model system was first provided by an observation by Breslow and co-workers that 8-cyclodextrin functionalized with two imidazole groups will catalyze the 1,2-cyclic phosphate of 4-rert-butylcatechol (67). The dependence of hydrolysis rate on pH mimics that of RNase A, and this behavior demonstrates that the presence of two imidazole functional groups on a nonionizable framework is the simplest kinetic mimic of the enzyme. 

Preparations are listed in Table 47. Main interest lies in determining how metal ions catalyze the hydrolysis of ADP and ATP. ATP plays a crucial role in the energy metabolism of all living cells and divalent metal ions (Mg +, Mn " and Ca ) play an important role in these phosphoryl transfer processes. Divalent metal ions such as Mg +, Ca, Zn, Cu and Mn " provide only modest in vitro catalysis "" and stronger, more specific coordination to phosphate units appears to be required by the enzyme. Co " (and Cr" ) complexes of ADP and ATP have been shown to mimic many of the biological functions of the Mg" enzyme, and since the cobalt(III)-phosphatc coordination remains intact, the specificity of alternative coordination sites, and the stereochemical requirements at phosphorus, have been elucidated in some cases. Often the Co "-enzyme species is biologically active and several enzymic functions of ATP have been examined in this manner. 

An exciting field of considerable importance related to CyD catalysis is their use as enzyme models by testing the reactivity of appropriately substituted CyDs [29-32]. For instance, to mimic the cleavage of RNA followed by cyclization of phosphate ester with subsequent hydrolysis using imidazole groups of Histidine-12 and Histidine-119 of ribonudease A, isomeric diimidazole-substituted at C6 positions )8-CyDs 18-20 were synthesized [29] and checked for their influence on the... 

Metallomicellar-catalyzed reactions, inclnding hydrolysis, oxidorednction, and C—C bond formation, might characterize these snpramolecular objects as metalloenzyme mimics that use hydrophobic microenvironment and active centers in constrained domains. In this direction, formal approaches using Michaelis-Menten methods known for enzyme chemistry were applied to kinetics characterization of micellar catalysis. In addition, recent achievements of advanced organometallic reactions such as Heck, Suzuki, and Sonogashira couplings as well as olefin metathesis, directly in water and at room temperature, make the use of surfactants particularly promising to lower the environmental impact, which has become a requirement for the chemical industry in the past years. ... 

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