Enzyme chemistry reactions

We 11 see numerous examples of both reaction types m the following sections Keep m mind that m vivo reactions (reactions m living systems) are enzyme catalyzed and occur at far greater rates than those for the same transformations carried out m vitro ( m glass ) m the absence of enzymes In spite of the rapidity with which enzyme catalyzed reactions take place the nature of these transformations is essentially the same as the fundamental processes of organic chemistry described throughout this text... 

Perez-Bendito, D. Silva, M. Kinetic Methods in Analytical Chemistry. Ellis Horwood Chichester, England, 1988. Additional information on the kinetics of enzyme catalyzed reactions maybe found in the following texts. 

Enzymes are basically specialty proteins (qv) and consist of amino acids, the exact sequence of which determines the enzyme stmcture and function. Although enzyme molecules are typically very large, most of the chemistry involving the enzyme takes place in a relatively small region known as the active site. In an enzyme-catalyzed reaction, binding occurs at the active site to one of the molecules involved. This molecule is called the substrate. Enzymes are... 

Chelation is a feature of much research on the development and mechanism of action of catalysts. For example, enzyme chemistry is aided by the study of reactions of simpler chelates that are models of enzyme reactions. Certain enzymes, coenzymes, and vitamins possess chelate stmctures that must be involved in the mechanism of their action. The activation of many enzymes by metal ions most likely involves chelation, probably bridging the enzyme and substrate through the metal atom. Enzyme inhibition may often result from the formation by the inhibitor of a chelate with a greater stabiUty constant than that of the substrate or the enzyme for a necessary metal ion. 

Espenson gives examples from inorganic chemistry Jencks describes enzyme-catalyzed reactions in which the common intermediate is an acylated enzyme... 

Biihler, H., Bayer, A. and Effenberger, F. (2000) Enzyme-catalyzed reactions, part 39. A convenient synthesis of optically active 5,5-disubstituted 4-amino- and 4-hydroxy-2(5f/)-furanones from (5)-ketone cyanohydrins. Chemistry - A European Journal, 6, 2564—2571. 

One of the most important metals with regard to its role in enzyme chemistry is zinc. There are several significant enzymes that contain the metal, among which are carboxypeptidase A and B, alkaline phosphatase, alcohol dehydrogenase, aldolase, and carbonic anhydrase. Although most of these enzymes are involved in catalyzing biochemical reactions, carbonic anhydrase is involved in a process that is inorganic in nature. That reaction can be shown as... 

Very few enzyme-catalysed reactions involving the reduction of alkenes have achieved any degree of recognition in synthetic organic chemistry. Indeed the only transformation of note involves the reduction of a, (3-unsaturated aldehydes and ketones. For example, bakers yeast reduction of (Z)-2-bromo-3-phenylprop-2-enal yields (S)-2-bromo-3-phenylpropanol in practically quantitative yield (99 % ee) when a resin is employed to control substrate concen-tration[50]. Similarly (Z)-3-bromo-4-phenylbut-3-en-2-one yields 2(5), 3(,S)-3-bromo-4-phenylbutan-2-ol (80% yield, >95% ee)[51]. Carbon-carbon double bond reductases can be isolated one such enzyme from bakers yeast catalyses the reduction of enones of the type Ar—CH = C(CH3)—COCH3 to the corresponding (S)-ketones in almost quantitative yields and very high enantiomeric excesses[52]. 

This chapter describes a number of examples of kinetic isotope effects on chemical reactions of different types. These examples will be used to illustrate many aspects of the measurement, interpretation, and theoretical calculation of KIE s. Many of the examples are chosen from the field of organic chemistry. Chapter 11 deals with biochemistry, more specifically with enzyme chemistry. 

It is reasonable to expect that isotopic substitution on solvent molecules will affect both equilibrium and rate constants. This is especially true for reactions in aqueous media, many of which are acid or base catalyzed and therefore sensitive to pH or pD. Furthermore H/D aqueous solvent isotope effects often display significant nonlinearity when plotted against isotope fraction of the solvent. The analysis of this effect can yield mechanistic information. The study of aqueous solvent isotope effects is particularly important in enzyme chemistry because enzyme reactions universally occur in aqueous media and are generally pH sensitive. 

Although conformational changes are essential features of proteins, the conformational basis of protein activity is not yet understood at the molecular and atomic levels. It is generally assumed that the mechanism of enzyme-catalyzed reactions would he defined if all the intermediates and transition states between the initial and final stages, as well as the rate constants, could be characterized. But in spite of constant progress in such characterization, most enzymatic mechanisms are not understood in terms of physical organic chemistry and enzyme activity is still regarded as a miracle as compared to classical catalysis. 

Frequently, after assembly of the peptide natural product by the NRPS, enzyme-catalyzed reactions impart additional functionality and structural elements. The reactions are very diverse and a thorough survey of the known enzymology is beyond the scope of this chapter, however, several recent review articles describe the various chemistries that are known. °... 

The schemes considered are only a few of the variety of combinations of consecutive first-order and second-order reactions possible including reversible and irreversible steps. Exact integrated rate expressions for systems of linked equilibria may be solved with computer programs. Examples other than those we have considered are rarely encountered however except in specific areas such as oscillating reactions or enzyme chemistry, and such complexity is to be avoided if at all possible. 

Brown BR, Bocks SM (1963) Some new enzymic reactions of phenols. In Pridham JB (ed) Enzyme chemistry of phenolic compounds. Pergamon Press, Oxford, p 129... 

Several fundamental aspects of enzymatic catalysis must be considered in any discussion of the chemistry of enzymatic reactions. First, an enzyme-catalysed reaction proceeds with formation of an... 

A class of compounds in which a positively charged atom from group V or VI of the periodic table (c.g., N, O, S, P, As, Se) is bonded to a carbon atom having an unshared pair of electrons. Whereas there is only one canonical form for nitrogen ylides (R3N —CR2 ), because of pTT-dTT bonding, two canonical forms can be written for phosphorus Le., R3P=CR2 R3P —CR2 ) and sulfur ylides (R2S=CR2 R3S —CR2 ). A number of enzyme-catalyzed reactions have been reported to utilize ylide-based chemistry. For example, the ylide form of the... 

Silverman, R.B. (2000) The Organic Chemistry of Enzyme-Catalyzed Reactions, Academic Press, New York. 

The use of a monolithic stirred reactor for carrying out enzyme-catalyzed reactions is presented. Enzyme-loaded monoliths were employed as stirrer blades. The ceramic monoliths were functionalized with conventional carrier materials carbon, chitosan, and polyethylenimine (PEI). The different nature of the carriers with respect to porosity and surface chemistry allows tuning of the support for different enzymes and for use under specific conditions. The model reactions performed in this study demonstrate the benefits of tuning the carrier material to both enzyme and reaction conditions. This is a must to successfully intensify biocatalytic processes. The results show that the monolithic stirrer reactor can be effectively employed in both mass transfer limited and kinetically limited regimes. 

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