Enzymatic reactions, biomimetic

Divergence of Enzymatic and Biomimetic Chemical Cyclization Reactions.297... 

Biomimetic studies typically have one or more of the following objectives (i) to reproduce in a small synthetic molecule reactivity that was theretofore only observed in an enzyme (ii) to understand the mechanisms of an enzymatic reaction and the relationship between the stereoelectronic attributes of the catalytic site and its reactivity and (iii) to develop practical catalysts by exploiting and adopting solutions that evolved in Nature. Biomimetic studies of cytochrome c oxidase have been particularly impactfull in addressing aim (ii). On the other hand, this approach is... 

The overwhelming majority of biomimetics operate in liquid. Their activity depends on the origin of solvents, reaction mixture and cell effects. Gas-phase oxidation processes are less dependent on these effects and in the first approximation can be considered as oxidation under quasi-ideal conditions. It goes without saying that enzymatic reactions do not proceed in gases. However, it is possible to simulate catalytic functions in the gas phase. This simplifies the decoding of the reaction mechanism, not complicated by factors accompanying the liquid-phase oxidation [1],... 

It will be of some interest to learn how to build catalysts to handle the particular substrates that natural enzymes cleave, at a rate comparable to the rates of those enzymatic reactions. However, one of the aims of biomimetic chemistry is to extend the kinds of rates and selec-tivities of enzymatic reactions into reactions for which natural enzymes have not been optimized and to substrates that are neither recognized nor handled by normal enzymes. It is clear that we already have achieved this, even though our ribonuclease model system has some distance to go before it can approach the kinds of rates we have observed in the cyclodextrin ferrocinnamate ester reaction, for instance. In lock and key chemistry, the keys that fit artificial enzymes best are not the same as the keys that open the natural enzyme locks. 

Stereospecific 2,3-epoxidation of squalene, followed by a nonconcerted carbocationic cyclization and a series of carbocationic rearrangements, forms lanosterol [79-65-0] (77) in the first steps dedicated solely toward steroid synthesis (109,110). Several biomimetic, cationic cydizations to form steroids or steroidlike nuclei have been observed in the laboratory (111), and the total synthesis of lanosterol has been accomplished by a carbocation—olefin cydization route (112). Through a complex series of enzyme-catalyzed reactions, lanosterol is converted to cholesterol (2). Cholesterol is the principal starting material for steroid hormone biosynthesis in animals. The cholesterol biosynthetic pathway is composed of at least 30 enzymatic reactions. Lanosterol and squalene appear to be normal constituents, in trace amounts, in tissues that are actively synthesizing cholesterol. 

Similar to enzymatic catalysis, biomimetic catalysis offers high selectivity and efficiency. Biomimetic synthesis and the closely related cascade reaction techniques have great potential for accomplishing the goals of Green Chemistry that is beginning to be resized. 

The approach using cyclodextrin as a binding site has also been developed. Cyclodextrins are widely utilized in biomimetic chemistry as simple models for an enzyme because they have the ability to form inclusion complexes with a variety of molecules and because they have catalytic activity toward some reactions. Kojima et al. (1980, 1981) reported the acceleration in the reduction of ninhydrin and some dyes by a 1,4-dihydronicotinamide attached to 3 Cyclodextrin. Saturation kinetics similar to enzymatic reactions were observed here, which indicates that the reduction proceeds through a complex. Since the cavity of the cyclodextrin molecule has a chiral environment due to the asymmetry of D-glucose units, these chiralities are expected to be effective for the induction of asymmetry into the substrate. Asymmetric reduction with NAD(P)H models of this type, however, has not been reported. Asymmetric reduction by a 1,4-dihydronicotinamide derivative took place in an aqueous solution of cyclodextrin (Baba et al. 1978), although the optical yield from the reduction was quite low. Trifluoromethyl aryl ketones were reduced by PNAH in 1.1 to 5.8 % e.e. in the presence of 3-cyclodextrin. Sodium borohydride works as well (Table 18). In addition to cyclodextrin, Baba et al. also found that the asymmetric reductions can be accomplished in the presence of bovine serum albumin (BSA) which is a carrier protein in plasma. 

The study of biomimetics can be of great benefit for the understanding of enzymatic reactions. The term biomimetic refers, in the context of this work, to a compound that mimics structural, functional and spectroscopic properties of an enzyme [67]. Often only one or two of these aspects are achieved for a model system and they usually display substantially lower activity. There are, however, advantages over the enzyme model complexes are generally more stable and robust than their enzymatic counterpart, they can be readily crystalUzed and provide easy accessible structural information on metal ion coordination. Also as these model systems are considerably less complex, kinetic and spectroscopic data interpretation is simplified and— by comparison to data derived for the enzyme— the mechanism of action and structural features can be elucidated and thus related back to the parent metalloenzyme. Also models can be obtained on a larger scale and are often less costly to synthesize, a distinct benefit for potential applications. A few structures of model complexes for dinuclear hydrolytic enzymes are shown in Fig. 1.4. The approaches for ligand and complex design are diverse. 

In natural processes, metal ions are often in high oxidation states (2 or 3), whereas in chemical systems the metals are in low oxidation states (0 or 1). This fact inverts the role of the metal center, such that it acts as a one-electron sink in a natural system, but as a nucleophile in an artificial ones (see other chapters of this book and the review by Aresta et al. [109]). Nevertheless, important biochemical processes such as the reversible enzymatic hydration of C02, or the formation of metal carbamates, may serve as natural models for many synthetic purposes. Starting from the properties of carbonic anhydrase (a zinc metalloenzyme that performs the activation of C02), Schenk et al. proposed a review [110] of perspectives to build biomimetic chemical catalysts by means of high-level DFT or ah initio calculations for both the gas phase and in the condensed state. The fixation of C02 by Zn(II) complexes to undergo the hydration of C02 (Figure 4.17) the use of Cr, Co, or Zn complexes as catalysts for the coordination-insertion reaction of C02 with epoxides and the theoretical aspects of carbamate synthesis, especially for the formation of Mg2+ and Li+ carbamates, are discussed in the review of Schenk... 

The area between enzymatic and chemical catalyses, associated with simulation of biochemical processes by their basic parameters, is accepted as mimetic catalysis. The key aspect of the mimetic catalyst is diversity of enzyme and biomimetic function processes, which principally distinguishes the mimetic model from traditional full simulation. Based on the analysis of conformities and diversities of enzymatic and chemical catalysis, the general aspects of mimetic catalysis are discussed. An idealized model of the biomimetic catalyst and the exclusive role of the membrane in its structural organization are considered. The most important achievements in the branch of catalysis are shown, in particular, new approaches to synthesis and study of biomimetic catalase, peroxidase and monooxidases reactions. 

The change of electrode potential (E) of the catalase reaction with time was measured by a voltmeter. pH and E values for aqueous hydrogen peroxide were determined simultaneously for possible correlations between pH metric and potentiometric results of enzymatic activity of catalase-biomimetic sensors. The electrochemical unit was also equipped with a magnetic mixer. 

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