Dependent reactions

Using a guided ion beam instrument the translational energy dependent reaction cross sections of endothemiic fragmentation processes can be detemiined [32]. Modelling these cross sections ultimately yields their energy tln-esholds and a great deal of valuable themiochemical infomiation has been derived with this teclmique. Precision of 0.2 eV can be obtained for reaction tln-esholds. Bimolecular reactions can also be studied and reaction enthalpies derived from the analysis of the cross section data. 

Alkynic esters react with nitrile oxides in a pH dependent reaction to product isoxazolin-5-ones (Scheme 145) (71JCS(C)86). Alkynic ethers also react with benzonitrile oxide to produce an isoxazole-ether which on treatment with HCl or HBr gave an isoxazolinone (Scheme 145) (63CB1088,58MI41600). The reaction of benzonitrile oxide with dimethoxyketene yielded a dimethyl acetal which was split with acid into the isoxazolinone (Scheme 145) (59G15H). 

In other cases, it may be impossible to describe the kinetics properly using a single reaction path. A variety of pathways may contribute to the reaction kinetics. One or more paths may be dominant at low temperature, whereas other paths may be dominant at high temperatures. This results in a temperature-dependent reaction mechanism. In such situa-... 

A. P. J. Jansen. Monte Carlo simulation of chemical reactions on a surface with time-dependent reaction-rate constants. Comp Phys Commun 56 1-12, 1995. 

Substrate RuBP binds much more tightly to the inactive E form of rubisco (An = 20 nM) than to the active ECM form (A, for RuBP = 20 ixM). Thus, RuBP is also a potent inhibitor of rubisco activity. Release of RuBP from the active site of rubisco is mediated by rubisco activase. Rubisco activase is a regulatory protein it binds to A-form rubisco and, in an ATP-dependent reaction, promotes the release of RuBP. Rubisco then becomes activated by carbamylation and Mg binding. Rubisco activase itself is activated in an indirect manner by light. Thus, light is the ultimate activator of rubisco. 

FIGURE 24.27 Dicarboxylic acids can be formed by oxidation of the methyl group of fatty acids in a cytochrome P-450-dependent reaction. 

FIGURE 25.2 (a) The acetyl-CoA carboxylase reaction produces malonyl-CoA for fatty acid synthesis, (b) A mechanism for the acetyl-CoA carboxylase reaction. Bicarbonate is activated for carboxylation reactions by formation of N-carboxybiotin. ATP drives the reaction forward, with transient formation of a carbonylphosphate intermediate (Step 1). In a typical biotin-dependent reaction, nncleophilic attack by the acetyl-CoA carbanion on the carboxyl carbon of N-carboxybiotin—a transcarboxylation—yields the carboxylated product (Step 2). 

Both prokaryotes and eukaryotes are capable of introducing a single cis double bond in a newly synthesized fatty acid. Bacteria such as E. coli carry out this process in an Og-independent pathway, whereas eukaryotes have adopted an Og-dependent pathway. There is a fundamental chemical difference between the two. The Og-dependent reaction can occur anywhere in the fatty acid chain. 

Mammals synthesize phosphatidylserine (PS) in a calcium ion-dependent reaction involving aminoalcohol exchange (Figure 25.21). The enzyme catalyzing this reaction is associated with the endoplasmic reticulum and will accept phosphatidylethanolamine (PE) and other phospholipid substrates. A mitochondrial PS decarboxylase can subsequently convert PS to PE. No other pathway converting serine to ethanolamine has been found. 

Write a reasonable mechanism for the 3-ketosphinganine synthase reaction, remembering that it is a pyridoxal phosphate-dependent reaction. 

Biotin is involved in carboxylation and decarboxylation reactions. It is covalently bound to its enzyme. In the carboxylase reaction, C02 is first attached to biotin at the ureido nitrogen, opposite the side chain in an ATP-dependent reaction. The activated C02 is then transferred from carboxybiotin to the substrate. The four enzymes of the intermediary metabolism requiring biotin as a prosthetic group are pyruvate carboxylase (pyruvate oxaloacetate), propionyl-CoA-carboxylase (propionyl-CoA methylmalonyl-CoA), 3-methylcroto-nyl-CoA-carboxylase (metabolism of leucine), and actyl-CoA-carboxylase (acetyl-CoA malonyl-CoA) [1]. 

Hicks (H6) and Frazer and Hicks (F3) considered the ignition model in which exothermic, exponentially temperature-dependent reactions occur within the solid phase. Assuming a uniformly mixed solid phase, the one-dimensional unsteady heat-flow equation relates the propellant temperature, depth from the surface, and time by the nonlinear equation ... 

Figure 1.8. Schematic frequency distributions for some independent (reaction input or control) resp. dependent (reaction output) variables to show how non-Gaussian distributions can obtain for a large population of reactions (i.e., all batches of one product in 5 years), while approximate normal distributions are found for repeat measurements on one single batch. For example, the gray areas correspond to the process parameters for a given run, while the histograms give the distribution of repeat determinations on one (several) sample(s) from this run. Because of the huge costs associated with individual production batches, the number of data points measured under closely controlled conditions, i.e., validation runs, is miniscule. Distributions must be estimated from historical data, which typically suffers from ever-changing parameter combinations, such as reagent batches, operators, impurity profiles, etc.

Minimizing the cycle time in filament wound composites can be critical to the economic success of the process. The process parameters that influence the cycle time are winding speed, molding temperature and polymer formulation. To optimize the process, a finite element analysis (FEA) was used to characterize the effect of each process parameter on the cycle time. The FEA simultaneously solved equations of mass and energy which were coupled through the temperature and conversion dependent reaction rate. The rate expression accounting for polymer cure rate was derived from a mechanistic kinetic model. 

Initial features are mostly pulselessness, difficulty in ventilation, desaturation, and a decreased end-tidal CO2. Cutaneous symptoms are observed in 66-70% of patients in case of IgE-mediated reactions but in more than 90% in non-IgE-mediated reactions. On the contrary, cardiovascular collapse and bronchospasm are more frequent in IgE-dependent reactions (table 2). Severe anaphylaxis may be a primary cardiac arrest [9]. 

Glucuronate is reduced to L-gulonate in an NADPH-dependent reaction L-gulonate is the direct precursor of ascorbate in those animals capable of synthesizing this vitamin. In humans and other primates as well as guinea pigs, ascorbic acid cannot be synthesized because of the absence of L-g ulonolactone oxidase. L-Gulonate is metabolized ultimately to D-xylulose 5-phosphate, a constituent of the pentose phosphate pathway. 

Biotin functions to transfer carbon dioxide in a small number of carboxylation reactions. A holocarboxylase synthetase acts on a lysine residue of the apoenzymes of acetyl-CoA carboxylase, pymvate carboxylase, propi-onyl-CoA carboxylase, or methylcrotonyl-CoA carboxylase to react with free biotin to form the biocytin residue of the holoenzyme. The reactive intermediate is 1-7V-carboxybiocytin, formed from bicarbonate in an ATP-dependent reaction. The carboxyl group is then transferred to the substrate for carboxylation (Figure 21—1). 

If the pressure for the process is lowered, the reaction (R3) will shift from a first-order reaction (high-pressure limit) to a second-order reaction (low-pressure limit). If (R3) is now considered a second-order reaction and assuming that the other pressure dependent reactions do not shift regime, determine expressions for d[C2H6]/dt, d[CH3]/dt, d[C2Hs]/dt and d[H]/dt. 

Proteolytic cleavage has proven to be an efficient tool for exploring the structure and function of the Na,K-ATPase. Exposure and protection of bonds on the surface of the cytoplasmic protrusion provides unequivocal evidence for structural changes in the a subunit accompanying E1-E2 transition in Na,K-ATPase [52]. Localization of the proteolytic splits provided a shortcut to identification of residues involved in E1-E2 transition [33,53,54] and to detection of structure-function correlations [33]. Further proteolysis identifies segments at the surface of the protein and as the cytoplasmic protrusion is shaved off all ATP-dependent reactions are abolished. 

Loftier F, R Muller, F Lingens (1991) Dehalogenation of 4-chlorobenzoate by 4-chlorobenzoate dehalogenase from Pseudomonas sp. CBS3 an ATP/coenzyme A dependent reaction. Biochem Biophys Res Commun 176 1106-1111. 

SURFACE-STRUCTURE-DEPENDENT REACTION PATHWAYS OF METHYL GROUPS ON NI(IOO) and NI(111) SURFACES... 

Equation (3.3) gives the potential dependence of the reaction free energy of Reaction (3.2). Since this reaction equilibrium defines the standard hydrogen electrode potential, we now have a direct fink between quite simple DFT calculations and the electrode potential. In a similar way, we can now calculate potential-dependent reaction free energies for other reactions, such as O - - H" " + e OH or OH - -+ e HzO. 

---