Pyridoxal 5 -phosphate, decarboxylases utilizing

Among the numerous enzymes that utilize pyridoxal phosphate (PLP) as cofactor, the amino acid racemases, amino acid decarboxylases (e.g., aromatic amino acids, ornithine, glutamic acid), aminotransferases (y-aminobutyrate transaminase), and a-oxamine synthases, have been the main targets in the search for fluorinated mechanism-based inhibitors. Pharmaceutical companies have played a very active role in this promising research (control of the metabolism of amino acids and neuroamines is very important at the physiological level). 

In the same scheme, a representation of the action of tyrosine transaminase (EC 2.6.1.5) acting on tyrosine (Tyr, Y) is shown. This enzyme utilizes pyridoxal phosphate to remove toe amino group from tyrosine (Tyr, Y) and transfer it to a-ketoglutarate (2-oxoglutarate) with formation of glutamate (Glu, E) from the latter and 4-hydroxyphenylpyruvate from the former. Then, 4-hydroxyphenylpyruvate decarboxylase (EC 4.1.1.80), which appears to require thiamine diphosphate and... 

The principal pathways for the biogenesis and metabolism of histamine are well known. Histamine is formed by decarboxylation of the amino acid, L-histidine, a reaction catalyzed by the enzyme, histidine decarboxylase. This decarboxylase is found in both mammalian and non-mammalian species. The mammalian enzyme requires pyridoxal phosphate as a cofactor. The bacterial enzyme has a different pH optimum and utilizes pyruvate as a cofactor (26.27). 

L-Canaline is an ineffective antimetabolite of L-ornithine since it has little ability to antagonize ornithine-dependent reactions. On the other hand, it forms a covalently bound Schiff-base complex with the pyridoxal phosphate moiety of Bg-containing enzymes. As such it is a potent inhibitor of many decarboxylases and aminotransferases that utilize this vitamin. 

A number of decarboxylase enzymes have been described as catalysts for the preparation of chiral synthons, which are difficult to access chemically (see Chapter 2).264 The amino acid decarboxylases catalyze the pyridoxal phosphate (PLP)-dependent removal of C02 from their respective substrates. This reaction has found great industrial utility with one specific enzyme in particular, L-aspartate-P-decarboxylase (E.C. 4.1.1.12) from Pseudomonas dacunhae. This biocatalyst, most often used in immobilized whole cells, has been utilized by Tanabe to synthesize L-alanine on an industrial scale (multi-tons) since the mid-1960s (Scheme 19.33).242-265 Another use for this biocatalyst has been the resolution of racemic aspartic acid to produce L-alanine and D-aspartic acid (Scheme 19.34). The cloning of the L-aspartate-P-decarboxylase from Alcaligenes faecalis into E. coli offers additional potential to produce both of these amino acids.266... 

The (I( )-l-amino-2-propanol linker is known to be derived from threonine. In S. enterica, CobD was found to be an enzyme with L-threonine 0-3-phosphate decarboxylase activity, which generates (/f)-l-amino-2-propa-nol phosphate. The enzyme is a pyridoxal phosphate requiring enzyme and the structure of the protein has been determined by X-ray crystallography (Figure 28). The structure of CobD was found to be highly similar to the aspartate aminotransferase family of enzymes. Structures of CobD with substrate and product bound have allowed a detailed mechanism for the enzyme to be proposed, whereby the external aldimine is directed toward decarboxylation rather than aminotransfer. Threonine phosphate, itself, is synthesized from L-threonine by the action of a kinase, which is encoded by pduX The pduX is housed within the propanediol utilization operon rather than the cobalamin biosynthetic operon for reasons that are not clear. 

Decarboxylation reactions are common in Nature and they are involved in many pathways, including decarboxylation of keto acids, amino acid conversions, and carbohydrate synthesis. Many decarboxylases use cofactors such as metal ions, pyridoxal 5 -phosphate, biotin, and flavin, but a small subset, for example, orotidine 5 -phosphate decarboxylase (ODCase) and methyhnalonyl CoA decarboxylase do not utilize any cofactor. ODCase catalyzes the decarboxylation of orotic acid (shown in Figure 8), and it generates one of the largest rate enhancements known to be produced by any enzyme (rate of the reaction is enhanced by a factor of Several... 

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