Cucumber basic protein

The molecular structure of another blue protein, the phytocyanin (phytocyanins are electron carriers found in the non-photosynthetic part of plants) cucumber basic protein (FW=10 100), also known as plantacyanin, is shown in Figure 33.60... 

Blue copper proteins, 36 323, 377-378, see also Azurin Plastocyanin active site protonations, 36 396-398 charge, 36 398-401 classification, 36 378-379 comparison with rubredoxin, 36 404 coordinated amino acid spacing, 36 399 cucumber basic protein, 36 390 electron transfer routes, 36 403-404 electron transport, 36 378 EXAFS studies, 36 390-391 functional role, 36 382-383 occurrence, 36 379-382 properties, 36 380 pseudoazurin, 36 389-390 reduction potentials, 36 393-396 self-exchange rate constants, 36 401-403 UV-VIS spectra, 36 391-393 Blue species... 

We have studied the blue copper proteins plastocyanin, azurin, cucumber basic protein ( ) and nitrite reductase (NiR) (159,160). We shah focus on these four in the remainder of this section. 

Fig. 8. Simulated (160) and experimental (165,166) MCD spectra of (a) azurin, (b) plastocyanin, (c) cucumber basic protein, and (d) nitrite reductase.

Solvent is usually excluded from the blue copper site, which is buried 6 A inside the protein, having only the His ligand from the copperbinding loop exposed to the surface. The phytocyanins, stellacyanin and plantacyanin (cucumber basic protein), are exceptions, in which both His ligands are solvent exposed and the copper ion is only 3 A beneath the protein surface. This situation makes the copper center in this family of blue copper proteins more accessible to low-molecular-weight solutes (see Section V). 

Crystal structures of three phytocyanins are currently available. Two are for plantacyanins, from cucumber (also known as cucumber basic protein) (Guss et al., 1988, 1996) and from spinach (Einsle et al., 2000), and one is for the recombinant BCB domain of cucumber stella-cyanin (Hart et al., 1996). The three proteins display folding topology identical to one another, suggesting that phytocyanins fold into a uniform structure, which can be designated as a phytocyanin fold. As a historical note, the crystallization of the cucumber basic protein and its preliminary crystallographic data were reported in 1977, before any structure of a blue copper protein was available (Colman et al., 1977). However, the structure was solved in 1988 only by application of the then newly... 

At this writing, the three-dimensional sttuctures of eight different naturally occurring type 1 copper proteins are known. These include the cupredoxins plastocyanin at 1.33 A resolution (pdb code 1 PTC), azurin at 1.8 A (pdb code 2AZA), pseudoazurin at 1.55 A (pdb code IPAZ), amicyanin at 1.3 A (pdb code lAAC), auracyanin at 1.55 A (pdb code IQHQ), rusticyanin at 1.9 A (pdb code IRCY), and the phytocyanins cucumber basic protein at 1.8 A (pdb code2CBP), and stellacyanin at 1.6 A (pdb code IJER) Atomic coordinates for these and all other single-domain type 1 copper proteins are available from the Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (PDB) and can be accessed online at www.rcsb.org/pdb/. 

Cucumber Basic Protein C. sativus X-ray Cull 1.80 2CBP 119... 

Redox potentials for the different copper centers in the blue oxidases have been determined for all members of the group but in each case only for a limited number of species. The available data are summarized in Table VI 120, 121). The redox potentials for the type-1 copper of tree laccase and ascorbate oxidase are in the range of 330-400 mV and comparable to the values determined for the small blue copper proteins plastocyanin, azurin, and cucumber basic protein (for redox potentials of small blue copper proteins, see the review of Sykes 122)). The high potential for the fungal Polyporus laccase is probably due to a leucine or phenylalanine residue at the fourth coordination position, which has been observed in the amino-acid sequences of fungal laccases from other species (see Table IV and Section V.B). Two different redox potentials for the type-1 copper were observed for human ceruloplasmin 105). The 490-mV potential can be assigned to the two type-1 copper sites with methionine ligand and the 580-mV potential to the type-1 center with the isosteric leucine at this position (see Section V.B). The... 

The system is defined by the oxidation state of the copper ion (Cu), the protein (Pc red, reduced plastocyanin Pc ox, oxidised plastocyanin CBP, cucumber basic protein Nir, nitrite reductase Vacuum, quantum chemical optimisation in vacuum [14,34] Crystal, range observed in the available crystal structures in the Brookhaven protein data bank), and whether there is a connection between the metal ligands and the protein backbone (Con). 

Even if the calculations were performed on a simple model, the results presented in Figure 8 nicely reflect the structure-electronic spectroscopy relationship between the various types of copper-cysteinate proteins. The copper coordination geometry of axial type 1 proteins is close to trigonal, and their spectroscopic characteristics are reflected by the results obtained for (p > 80°. Rhombic type 1 proteins like pseudoazurin and cucumber basic protein, on the other hand, have (p angles between 70° and 80°. As can be seen from Figure 8, even at such a small... 

The first crystal structure information on a blue copper protein, for poplar plastocyanin in the Cu(II) state, was published in 1978 (2, 3). Since then, the Cu(I) state and related apo and Hg(II) substituted forms (5, 6), the green algal plastocyanin from Enteromorpha prolifera [Cu(II)] (7), azurin from Alcaligenes denitrificans [Cu(II) and Cu(D] (8, 9), azurin from Pseudomonas aeruginosa [Cu(II)] (10, 11), as well as pseudoazurin from Alcaligenes faecalis S-6 (12), and the cucumber basic protein, both in the Cu(II) state, have been published (13), making this one of the best-documented class of proteins. In addition, information as to three-dimensional structure in solution has been obtained from two-dimensional NMR studies on French bean and Scenedesmus obliquus plastocyanins (14,15). This review is concerned in the main with the active site chemistry. Other recent reviews are listed (16-20). 

In particular the structure determination of cucumber basic protein has been made using MAD data recorded on this instrument around the CuK edge (Guss et al 1988, section 9.7.5). This protein crystal structure had previously defied solution for many years because of problems associated with preparing heavy atom derivatives. 

Case study cucumber basic protein (CBP) (Guss et al 1988)... 

The SSRL area detector (Phizackerly et al 1980) has been used to solve the structure of cucumber basic protein using the MAD method. CBP is a protein of molecular weight 10100 Da and contains one copper atom. 

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