Covalent bonding, in proteins

Another type of covalent bond in proteins is the disulfide bond, formed by oxidative coupling of the -SH groups in cysteine. Oxytocin is an example of a cyclic peptide with a S-S bond. 

Primary structure. In a polymer, the sequence of monomers and the covalent bonds. In proteins, it refers to the amino acid sequence. 

Heterogeneous reaction (Section 6 1) A reaction involving two or more substances present in different phases Hydro genation of alkenes is a heterogeneous reaction that takes place on the surface of an insoluble metal catalyst Heterolytic cleavage (Section 4 16) Dissociation of a two electron covalent bond in such a way that both electrons are retained by one of the initially bonded atoms Hexose (Section 25 4) A carbohydrate with six carbon atoms High density lipoprotein (HDL) (Section 26 11) A protein that carries cholesterol from the tissues to the liver where it is metabolized HDL is often called good cholesterol Histones (Section 28 9) Proteins that are associated with DNA in nucleosomes... 

An affinity label is a molecule that contains a functionality that is chemically reactive and will therefore form a covalent bond with other molecules containing a complementary functionality. Generally, affinity labels contain electrophilic functionalities that form covalent bonds with protein nucleophiles, leading to protein alkylation or protein acylation. In some cases affinity labels interact selectively with specific amino acid side chains, and this feature of the molecule can make them useful reagents for defining the importance of certain amino acid types in enzyme function. For example, iodoacetate and A-ethyl maleimide are two compounds that selectively modify the sulfur atom of cysteine side chains. These compounds can therefore be used to test the functional importance of cysteine residues for an enzyme s activity. This topic is covered in more detail below in Section 8.4. 

It has the heme prosthetic group covalently bonded to protein cytochrome c does not lose its heme catalytic group in these systems, while peroxidases do (catalysis in organic solvents)... 

Several markers for the Maillard reaction have been described in the literature. For example, the product initially formed between glucose and lysine is partly transformed into furosine (Heyns et ah, 1968) on acid hydrolysis. Conversely, the fluorescent amino acid pentosidine (Sell and Monnier, 1989) is an advanced glycation endproduct (AGE) and may form covalent bonds between proteins (cross-linking). Furthermore, the Maillard reaction leads to an increase in characteristic fluorescence (excitation 370 nm, emission 440 nm) (Monnier et ah, 1984 Pongor et ah, 1984). 

In general, species containing transition metals and metalloids such as As, Sb, Se and Sn are thermodynamically more stable than those of the alkali and alkaline earth metals. Transition metals and metalloids form an integral part and are linked to the organic constituents by covalent bonds. In contrast alkali and alkaline earth metals are attached loosely by predominantly ionic bonds. Readers interested in the fundamentals of metal-protein interactions are referred to books... 

The serine proteases are a dass of proteolytic enzyme (they catalyze the hydrolysis of either ester or peptide bonds in proteins) that require an active site residue for covalent catalysis. The active site residue, the catalytic Ser-195, is particularly activated by hydrogen-bonding interactions with His-57 and Asp-102. Crystal structures show that Ser-195, His-57, and Asp-102 are dose in space. Together these three residues, which are located in the substrate binding (SI) pocket, form the famed catalytic triad of the serine proteases. In humans and mammals serine proteases perform many important functions, especially the digestion of dietary protein, in the blood-dotting cascade, and in the complement system ... 

Huang LS, Ortiz de Montellano PR (2006) Heme-protein covalent bonds in peroxidases and resistance to heme modification during halide oxidation. Arch Biochem Biophys 446 77-83... 

Huang LS, Wojciechowski G, Ortiz de Montellano PR (2006) Role of heme-protein covalent bonds in mammalian peroxidases - Protection of the heme by a single engineered heme-protein link in horseradish peroxidase. J Biol Chem 281 18983-18988... 

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