Circular dichroism difference

KD Philipson, VL Sato and K Sauer (1972) Exciton interaction in photosystem I reaction center from spinach chloroplasts. Absorption and circular dichroism difference spectra. Biochemistry 11 4591-4595... 

Circular dichroism Difference in intensity of absorption of right- and left-circularly polarized light by functional groups in asymmetric environment N, P, G Applications similar to but more powerful than ORD especially for functional groups such as 0=0. Conformational analysis of biomacromolecules in solutions. 

The unmodified and complementary oligonucleotides were also synthesized, in order to detect thermodynamic and spectroscopic differences between the double helices. Circular dichroism spectra revealed that the covalently bound anthracene does not stack in the centre of the DNA double helix. Mutagenic activity by intercalative binding of the anthracene residue is thus unlikely. Only in vitro and in vivo replication experiments with site-specifically modified... 

Circular dichroism employs standard dispersive or interferometric instmmentation, but uses a thermal source that is rapidly modulated between circular polari2ation states using a photoelastic or electro-optic modulator. Using phase-sensitive detection, a difference signal proportional to the absorption difference between left- and right-polari2ed light, AA is recorded as a function of wavenumber. Relative differential absorptions... 

The UV spectrum of a complex conjugated molecule is usually observed to consist of a few broad band systems, often with fine structure, which may be sharpened up in non-polar solvents. Such a spectrum can often be shown to be more complex than it superficially appears, by investigation of the magnetic circular dichroism (MCD) spectrum, or by introduction of dissymmetry and running the optical rotatory dispersion (ORD) or circular dichroism (CD) spectrum. These techniques will frequently separate and distinguish overlapping bands of different symmetry properties <71PMH(3)397). 

Optically active molecules show circular dichroism. Their extinction coefficients f l and are different and change as a function of wavelength. Using a suitable spectroelectrochemical cell, Af = fl -which is usually small compared to conventional extinction coefficients, can be measured. Combined with the special properties of a thin layer cell kinetic data can be extracted from CD-data [01 Liu]. (Data obtained with this method are labelled CD.)... 

Small-angle X-ray scattering (SAXS), circular dichroism (CD), and UV spectroscopy at different temperatures were used to investigate the nature of calf-thymus DNA in aqueous solution, in the presence of [Me Sn] " (n = 1-3) species. The results demonstrate that the [MeSn(IV)] moiety does not influence the structure and conformation of the DNA double helix, and does not degrade DNA, as indicated by agarose gel electrophoresis. Inter alia, the radii of gyration, Rg, of the cross section of native calf-thymus DNA, determined by SAXS in aqueous solution in the presence of [Me Sn] " (n = 1-3) species are constant and independent of the nature and concentration of the [Me Sn] species. 

Although the total content of carbohydrate fractions of the three components is similar, as reported by Williams et al., 1990, it was found that protein-rich fractions have a significantly lower glucuronic acid content. Circular dichroism studies conducted on different GA fractions showed that only the AGP and GP components have a secondary structure (Renard et al., 2006). The AGP fraction was isolated by gel filtration chromatography and subjected to deglycosylation with hydrofluoric acid (HF) to separate the protein (Qi et al., 1991). About 400 amino acids were contained by the AGP protein fraction ( 33% are... 

The magnetic and electronic properties of the D. gigas Fdll [3Fe-4S] center were revealed by different and complementary spectroscopic techniques EPR 89), Mossbauer 90, 91), resonance Raman (RR) 92), magnetic circular dichroism MCD) 93), EXAFS 94), saturation magnetization (95), electrochemistry 96), and NMR (97, 98). The [4Fe-4S] center is also well characterized and surprising information has been obtained in relation to cluster interconversions and noncysteinyl coordination, as illustrated for D. gigas Fdl and D. africanus Fdlll, as well as the possibility of generating unusual reduced states. 

Circular dichroism (c.d.) spectroscopy measures the difference in absorption between left- and right-circularly polarized light by an asymmetric molecule. The spectrum results from the interaction between neighboring groups, and is thus extremely sensitive to the conformation of a molecule. Because the method may be applied to molecules in solution, it has become popular for monitoring the structure of biological molecules as a function of solvent conditions. 

Fig. 4.—Difference-Circular Dichroism Spectra or-D-manno-Heptulose minus...

Ever since Pasteur s work with enantiomers of sodium ammonium tartrate, the interaction of polarized light has provided a powerful, physical probe of molecular chirality [18]. What we may consider to be conventional circular dichroism (CD) arises from the different absorption of left- and right-circularly polarized light by target molecules of a specific handedness [19, 20]. However, absorption measurements made with randomly oriented samples provide a dichroism difference signal that is typically rather small. The chirally induced asymmetry or dichroism can be expressed as a Kuhn g-factor [21] defined as ... 

Figure 15. Circular dichroism of the C=0 C li peak (BE = 292.7 eV) in fenchone at three different photon energies, indicated, (a) Photoelectron spectrum of the carbonyl peak of the (1S,4R) enantiomer, recorded with right (solid line) and left (broken line) circularly polarized radiation at the magic angle, 54.7° to the beam direction, (b) The circular dichroism signal for fenchone for (1R,4A)-fenchone (x) and the (lS,41 )-fenchone (+) plotted as the raw difference / p — /rep of the 54.7° spectra, for example, as in the row above, (c) The asymmetry factor, F, obtained by normalizing the raw difference. In the lower rows, error bars are included, but are often comparable to size of plotting symbol (l/ ,4S)-fenchone (x), (lS,4R)-fenchone (+). Data are taken from Ref. [38],...

The Ca -ATPase has been crystallized in both conformations [119,152-155]. The two crystal forms are quite different [10,88-93,156-161], suggesting significant differences between the interactions of Ca -ATPase in the Ei and E2 conformations. Since the Ei-E2-transition does not involve changes in the circular dichroism spectrum of the Ca -ATPase [162], the structural differences between the two states presumably arise by hinge-like or sliding motions of domains rather than by a rearrangement of the secondary structure of the protein. 

Of the visible spectroscopic techniques, CD spectroscopy has seen the most rapid and dramatic growth. The far-UV circular dichroism spectrum of a protein is a direct reflection of its secondary structure [71]. An asymmetrical molecule, such as a protein macromolecule, exhibits circular dichroism because it absorbs circularly polarized light of one rotation differently from circularly polarized light of the other rotation. Therefore, the technique is useful in determining changes in secondary structure as a function of stability, thermal treatment, or freeze-thaw. 

The u.v.-visible spectrum of the 4-hydroxy-2,2,6,6-tetramethyl-piperidine-N-oxyl-methyl-cobinamide is very similar to methyl-cobin-amide itself and as a result this technique cannot be used to rigorously identify the spin labeled derivative. The spin labeled compound does show a spectral change with pH between pH 7.0 and pH 2.0 which methyl-cobinamide does not exhibit. Despite the similarities between methyl-cobinamide and nitroxylmethylcobinamide, the circular dichroism spectrum of the two derivatives are quite different. Fig. 23 shows the marked difference in C. D. spectra of 4-hydroxy-2,2,6,6-tetramethylpiperidine-N-oxyl, methylcobinamide, and a methylcobinamide solution containing an equimolar amount of uncoordinated nitroxide. 

To obtain statistically significant comparisons of ordered and disordered sequences, much larger datasets were needed. To this end, disordered regions of proteins or wholly disordered proteins were identified by literature searches to find examples with structural characterizations that employed one or more of the following methods (1) X-ray crystallography, where absence of coordinates indicates a region of disorder (2) nuclear magnetic resonance (NMR), where several different features of the NMR spectra have been used to identify disorder and (3) circular dichroism (CD) spectroscopy, where whole-protein disorder is identified by a random coil-type CD spectrum. 

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