Chemical oligo

A large part of organic and macromolecular chemistry starts with the chemical functionalization of benzene, and benzene units serve us building blocks for important polymers. Naturally, benzene-based aromatic materials also represent an important subclass of jt-conjugaled architectures. Despite some synthetic difficulties related to the generation of structurally well-defined oligo- and poly(phenyl-... 

In conclusion, a variety of linear or cyclic oligo(phospholes)s and their derivatives are accessible via a set of efficient synthetic strategies. The potential of these compounds as advanced 71-conjugated systems is broadened by the presence of reactive trivalent P-centres, which allow a range of additional chemical modifications to be achieved. However, elucidation of structure-property relationships for these derivatives is still needed. 

The availability of these novel enzymes, next to the known pectic enzymes, offer new opportunities to use them as analytical tools in revealing the structure of oligo- and polysaccharides [31,32]. In contrast with frequently used chemical degradation methods, which usually have a poor selectivity, these enzymes act in a deflned way. To be able to recognize different structural units within the polymer, endo-acting types of enzyme are preferred, although accessory enzymes might be essential as well [30]. 

The first systematic study of the effects of IT bands on the number of nuclei and the oxidation number was carried out for oligo(dihexylferro-cenylene)s, 132 13s (83,84). All the oxidation states of 132-136 were generated by a quantitative chemical oxidation method. Table III shows the dependence of umax, emax, and Av1j2 values of the IT band on the oxidation state and the number of ferrocene units. The Ai/j/2 values... 

Biosynthesis of the polypeptide chain is realised by a complicated process called translation. The basic polypeptide chain is subsequently chemically modified by the so-called posttranslational modifications. During this sequence of events the peptide chain can be cleaved by directed proteolysis, some of the amino acids can be covalently modified (hydroxylated, dehydrogenated, amidated, etc.) or different so-called prosthetic groups such as haem (haemoproteins), phosphate residues (phosphoproteins), metal ions (metal-loproteins) or (oligo)saccharide chains (glycoproteins) can be attached to the molecule by covalent bonds. Naturally, one protein molecule can be modified by more means. 

In addition, Dose and Seitz (2005) employed native chemical ligation to synthesize peptide nucleic acids (PNAs) by linking shorter segments of PNAs to make long contiguous strands, which could not be made through typical oligo synthesis procedures. 

If an individual nucleotide is modified in the appropriate way, various enzymatic techniques can be used to polymerize the derivative into an existing oligonucleotide molecule. Alternatively, nucleotide polymers can be treated with chemical activators that can facilitate the attachment of a label at particular reactive sites. Thus, there are two main approaches to modifying DNA or RNA molecules enzymatic or chemical. Both procedures can produce highly active conjugates for sensitive assays to quantify or localize the binding of an oligo probe to its complementary strand in a complex mixture. 

The chemical modification of nucleic acids at specific sites within individual nucleotides or within oligonucleotides allows various labels to be incorporated into DNA or RNA probes. This labeling process can produce conjugates having sensitive detection properties for the localization or quantification of oligo binding to a complementary strand using hybridization assays. 

Some form of chemical labeling process must be used regardless of whether the final oligo conjugate is created by enzymatic or strictly chemical means. If enzymatic modification is to be done, the initial label still must be incorporated into an individual nucleoside triphosphate, which then is polymerized into an existing oligonucleotide strand (Section 1, this chapter). Fortunately, many useful modified nucleoside triphosphates are now available from commercial sources, often eliminating the need for custom derivatization of individual nucleotides. 

Fluorescent probes containing sulfhydryl-reactive groups can be coupled to DNA molecules containing thiol modification sites. The chemical derivatization methods outlined in Section 2.2 (this chapter) may be used to thiolate the oligo for subsequent modification with a fluorophore. Appropriate fluorescent compounds and their reaction conditions may be found in Chapter 9. The protocol discussed in the previous section can be used as a general guide for labeling DNA molecules. 

SCHEME 3.60 Chemical structures of oligo-phenyl vinyl compounds. 

Another series of GSL mimics with oligo-ethylene glycol as spacer have also been obtained successfully using trichloroacetimidate method [482]. In addition, fluorescence-labeled sLex glycosphingolipids have also been chemically synthesized as targets for investigating microdomain formation in membranes [483]. 

Toal SJ, Magde D, Trogler WC (2005) Luminescent oligo(tetraphenyl)silole nanoparticles as chemical sensors for aqueous TNT. Chem Commun 43 5465-5467... 

Based on the theory, the separation of enantiomers requires a chiral additive to the CE separation buffer, while diastereomers can also be separated without the chiral selector. The majority of chiral CE separations are based on simple or chemically modified cyclodextrins. However, also other additives such as chiral crown ethers, linear oligo- and polysaccharides, macrocyclic antibiotics, chiral calixarenes, chiral ion-pairing agents, and chiral surfactants can be used. Eew non-chiral separation examples for the separation of diastereomers can be found. 

Despite the wide variety of polymer hosts that have been synthesized and tested, the fundamental chemical structures adopted for SPEs remain strictly ether-based and are variations of the original oligo (ethylene oxide) structure, primarily due to the fact that no... 

IWo chapters treat widely divergent aspects of the aqueous degradation of carbohydrates. Christopher J. Biermann (Corvallis) discusses aqueous acidic hydrolysis and other cleavages of glycosidic linkages in oligo- and polysaccharides, with specific emphasis on their relation to procedures for determination of chemical structure. In the final chapter, Olof Theander (Uppsala) and David A. Nelson (Richland) provide an informative treatment of the... 

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