C terminal end

The unique characteristic of each protein is the distinctive sequence of amino acid residues in its polypeptide chain(s). Indeed, it is the amino acid sequence of proteins that is encoded by the nucleotide sequence of DNA. This amino acid sequence, then, is a form of genetic information. By convention, the amino acid sequence is read from the N-terminal end of the polypeptide chain through to the C-terminal end. As an example, every molecule of ribonucle-... 

FIGURE 5.20 Trypsin is a proteolytic enzyme, or protease, that specifically cleaves only those peptide bonds in which arginine or lysine contributes the carbonyl function. The products of the reaction are a mixture of peptide fragments with C-terminal Arg or Lys residues and a single peptide derived from the polypeptide s C-terminal end. 

The choline ester is prepared by treating the 2-bromoethyl ester with trimethyl-amine. The ester is cleaved with butyrylcholine esterase (pH 6, 0.05 M phosphate buffer, rt, 50-95% yield). As with the morpholinoethyl ester, the choline ester imparts greater solubility to the C-terminal end of very hydrophobic peptides, thus improving the ability to cleave enzymatically the C-terminal ester. ... 

A disulfide bond between cysteine residues in different peptide chains links the otherwise separate chains together, while a disulfide bond between cysteine residues in the same chain forms a loop. Such is the case, for instance, with vasopressin, an antidiuretic hormone found in the pituitary gland. Note that the C-terminal end of vasopressin occurs as the primary amide, -CONHz, rather than as the free acid. 

Matrix Metalloproteinases. Figure 2 ProMMP-2-TIMP-2 structure (adopted from [4]). TIMP-2 cartoon and transparent surface structure is shown in blue, MMP-2 in red. The C-terminal ends of both molecules are marked as spheres. 

Several splice variants of MOP (formerly MOR-1) have been cloned (MOP-1A to MOR-1X). The B, C, andD variants differ in their amino acid sequence at the C-terminal end [4]. These receptor valiants differ in their distribution in the central nervous system and in the rate of internalization and desensitization upon... 

SNAREs is an acronym for soluble NSF acceptor protein receptors. They are a superfamily of small and mostly membrane-bound proteins that are distinguished by the presence of a conserved stretch of 60 amino acids referred to as a SNARE motif. With few exceptions, a single transmembrane domain is located adjacent to the SNARE motif at the C-terminal end. Many SNAREs possess in addition an independently folded N-terminal domain whose structures are more diverse. 

Fig. 1. Ribbon representation of the three-dimensional structure of D. gigas hydro-genase (32). The large subunit is represented in dark gray. Fe is represented by black spheres, Ni by gray spheres, and inorganic sulfur by white spheres. The C-terminal end of the large subunit is close to the Ni smd completely buried in the structure.

The polymerizations initiated by HMDS and N-TMS amines usually complete within 24 h at ambient temperature with quantitative monomer consumption. These polymerizations in general are slower than those mediated by Deming s Ni(0) or Co (0) initiators (about 30-60 min at ambient temperature) [19, 24, 25], but are much faster than those initiated by amines at low temperature or using amine hydrochloride initiators [20]. These HMDS and N-TMS amine-mediated NCA polymerizations can also be applied to the preparation of block copolypeptides of defined sequence and composition [22]. This organosilicon-mediated NCA polymerization, which was also shown by Zhang and coworkers to be useful for controlled polymerization of y-3-chloropropanyl-L-Glu NCA [43], offers an advantage for the preparation of polypeptides with defined C-terminal end-groups. 

Figure 4 Sequential assignment of the backbone atoms for the segment Pro-109 to Val-113 of inhibited sfSTR by 4-D HCANNH and 4-D HCA(CO)NNH. Four planes are shown from each spectrum. The assigned backbone atoms are indicated in (A). In (B) the upper four planes in solid lines are from the 4-D HCANNH and the lower four planes in dashed lines are from the 4-D HCA(CO)NNH. The chemical shifts for the four correlated nuclei in each case are shown. The correlations continue for the segment Pro-109 to Pro-129. As Pro lacks a protonated N, this residue serves as a "stop" signal. The correlation of 19 residues with Pro at the N- and C-terminal ends is unique for this segment in the sequence of sfSTR, therefore these backbone atoms are specifically assigned without having to further assign side chain atoms. (From Ref. 5.)...

Such biosyntheses were models for the Merrifield-synthesis [8] (Fig. 3), which culminated in the development of fully automated peptide synthesizers [9]. In a repeated reaction cycle a N-terminal protected amino acid, which is attached with its C-terminal end to an insoluble solid support, is deprotected, activated and lengthened by a second protected amino acid unit. The deprotect -ing and coupling steps can be repeated until the entire peptide is assembled. 

Nemoto, N., Miyamoto-Sato, E., Husimi, Y. and Yanagawa, H. (1997) In vitro virus bonding of mRNA bearing puromycin at the 3 -terminal end to the C-terminal end of its encoded protein on the ribosome in vitro. FEBS Letters, 414, 405 408. 

Indeed, hydrophilic N- or C-terminal ends and loop domains of these membrane proteins exposed to aqueous phases are able to undergo rapid or intermediate motional fluctuations, respectively, as shown in the 3D pictures of transmembrane (TM) moieties of bacteriorhodopsin (bR) as a typical membrane protein in the purple membrane (PM) of Halobacterium salinarum.176 178 Structural information about protein surfaces, including the interhelical loops and N- and C-terminal ends, is completely missing from X-ray data. It is also conceivable that such pictures should be further modified, when membrane proteins in biologically active states are not always present as oligomers such as dimer or trimer as in 2D or 3D crystals but as monomers in lipid bilayers. 

Dynamic picture of bR from PM in 2D crystal A dynamic picture of bR in the 2D crystal thus obtained turns out to be highly heterogeneous the correlation times of which vary substantially from 10 2 to < 10 8 s depending upon the portions such as the TM and CP a-helices, loops, and N- or C-terminal ends (Figure 24C). Here, the above mentioned CP... 

Genes of interest can be tagged at either the N or C terminal end. The decision to tag a protein at either the N or the C terminal depends upon the properties of the protein of interest. In our case, all the eukaryotic translation initiation factors were tagged C terminally to allow the endogenous promoter to influence the expression of the tagged protein. 

The N-terminal end of a polypeptide chain, with its free amino group, is conventionally known as beginning of the chain, while the last amino acid, with free carboxyl group, is the C-terminal end of the chain (see Figure 2.7). 

The p-pleated sheet structure occurs in fibrous as well as globular proteins and is formed by intermolecular hydrogen bonds between a carboxyl group oxygen of one amino acid and an amine hydrogen of an adjacent polypeptide chain. Parallel p-pleated sheets form when the adjacent polypeptide chains are oriented in one direction (from N-terminal to C-terminal end or vice versa). Antiparallel p-pleated... 

---