Biomimetic interactions

Cacia, J., Quan, C. P., Vasser, M., Sliwkowski, M. B., and Frenz, J., Protein sorting by high-performance liquid chromatography I. Biomimetic interaction chromatography of recombinant human deoxyribonuclease I on polyionic stationary phases, /. Chromatogr., 634, 229, 1993. 

Alkyl-1,4-dihydropyridines on reaction with peracids undergo either extensive decomposition or biomimetic oxidation to A-alkylpyridinum salts (98JOC10001). However, A-methoxycarbonyl derivatives of 1,4- and 1,2-dihydro-pyridines (74) and (8a) react with m-CPBA to give the methyl tmns-2- 2>-chlorobenzoyloxy)-3-hydroxy-1,2,3,4-tetrahydropyridine-l-carboxylate (75) and methyl rran.s-2-(3-chlorobenzoyloxy)-3-hydroxy-l,2,3,6-tetrahydropyridine-l-carboxylate (76) in 65% and 66% yield, respectively (nonbiomimetic oxidation). The reaction is related to the interaction of peracids with enol ethers and involves the initial formation of an aminoepoxide, which is opened in situ by m-chlorobenzoic acid regio- and stereoselectively (57JA3234, 93JA7593). 

Knowledge about protein folding and conformation in biological systems can be used to mimic the design of a desired nanostructure conformation from a particular MBB and to predict the ultimate conformation of the nanostructure [152]. Such biomimetic nano-assembly is generally performed step by step. This wiU allow observation of the effect of each new MBB on the nanostructure. As a result, it is possible to control accurate formation of the desired nanostmcture. Biomimetic controlled and directed assembly can be utilized to investigate molecular interactions, molecular modeling, and study of relationships between the composition of MBBs and the final conformation of the nanostmctures. Immobilization of molecules on a surface could facilitate such studies [153]. 

A CRO may also allow for the in-house introduction of specialized lipophilic scales by transferring routine measurements. While the octanol-water scale is widely applied, it may be advantageous to utilize alternative scales for specific QSAR models. Solvent systems such as alkane or chloroform and biomimetic stationary phases on HPLC columns have both been advocated. Seydel [65] recently reviewed the suitabihty of various systems to describe partitioning into membranes. Through several examples, he concludes that drug-membrane interaction as it relates to transport, distribution and efficacy cannot be well characterized by partition coefficients in bulk solvents alone, including octanol. However, octanol-water partition coefficients will persist in valuable databases and decades of QSAR studies. 

Coradin, T., Durupthy, O. and Livage, J. (2002) Interactions of amino-containing peptides with sodium silicate and colloidal silica A biomimetic approach to silicification. Langmuir, 18, 2331-2336. 

In fact, such biomimetic molecules demonstrate the ability to tailor the growth of silica nanoparticles in a way that is very similar to diatom-extracted species. However, they demonstrate the same limitations in terms of morphological control of nanoparticle assembly. This is because the diatom shell architecture results not only from interactions of silica precursors with templating molecules but also benefits from a cell-driven molding of the vesicular compartment where silicification occurs [29]. Thus, it is very likely that diatom-like synthetic silica will only be achieved when such confinement/molding effects are taken into account in the design of biomimetic experiments [30]. 

As discussed in the first section of this chapter, interest in dendrimers has increased rapidly since the successful synthesis of the first cascade molecules two decades ago. Much of this interest has been driven by the expectation that dendrimers will exhibit unique properties [2-5, 60]. Because dendrimers in many cases interact strongly with metal ions, it seems reasonable to expect that such composite materials might provide additional heretofore unknown or biomimetic functions. This is particularly true in hght of the high number of metal ions that can be complexed to a single dendrimer and (in some cases) their well-defined position in the dendrimer. For example, there has been much recent speculation that these materials will be useful for catalysis [3, 4, 53,... 

The functions of phenylpropanoid derivatives are as diverse as their structural variations. Phenylpropanoids serve as phytoalexins, UV protectants, insect repellents, flower pigments, and signal molecules for plant-microbe interactions. They also function as polymeric constituents of support and surface structures such as lignins and suberins [1]. Therefore, biosynthesis of phenylpropanoids has received much interest in relation to these functions. In addition, the biosynthesis of these compounds has been intensively studied because they are often chiral, and naturally occurring samples of these compounds are usually optically active. Elucidation of these enantioselective mechanisms may contribute to the development of novel biomimetic systems for enantioselective organic synthesis. 

The closely related structures show completely different microbial uptake characteristics. The 3D structures described above show distinct different orientation of the backbone amide (tangental in type 1 versus radial in type 2), which can be explained by the interactions that take place between the FhuA receptor and the ferrichrome siderophore -As mentioned, the second coordination sphere of natural ferrichrome in FhuA receptor is very sensitive to the distance and orientation between a proton donor and the proton acceptor, therefore the orientation of the amide groups in the biomimetic siderophore plays a crucial role in receptor recognition. 

A sterically protected, water-soluble synthetic iron porphyrin could provide a readily available biomimetic catalyst for both basic research and potential industrial applications. Such a synthetic hemin might be superior to the enzyme, in that being a small molecule it could interact, with the polymeric lignin molecule more readily than can ligninase. 

Due to their better biomimetic properties, phospholipids have been proposed as an alternative to 1-octanol for lipophiiicity studies. The use of immobilized artificial membranes (lAM) in lipophiiicity determination was recently reviewed and we thus only briefly summarize the main conclusions [108]. lAM phases are silica-based columns with phospholipids bounded covalently. lAM are based on phosphatidylcholine (PC) linked to a silica propylamine surface. Most lipophiiicity studies with lAM were carried out using an aqueous mobile phase with pH values from 7.0 to 7.4 (log D measurements). Therefore, tested compounds were neutral, totally or partially ionized in these conditions. It was shown that the lipophiiicity parameters obtained on I AM stationary phases and the partition coefficients in 1-octanol/water system were governed by different balance of intermolecular interactions [109]. Therefore the relationships between log kiAM and log Poet varied with the class of compounds studied [110]. However, it was shown that, for neutral compounds with log Poet > 1, a correspondence existed between the two parameters when double-chain lAM phases (i.e., lAM.PC.MG and IAM.PC.DD2) were used [111]. In contrast, in the case of ionized compounds, retention on lAM columns and partitioning in 1 -octanol / water system were significantly different due to ionic interactions expressed in lAM retention but not in 1-octanol/water system and due to acidic and basic compounds behaving differently in these two systems. 

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