Biochemical parallelism

Compounds are transformed into each other by chemical reactions that can be run under a variety of conditions from gas-phase reactions in refineries that produce basic chemicals on a large scale, through parallel transformations of sets of compounds on well-plates in combinatorial chemistry, all the way to the transformation of a substrate by an enzyme in a biochemical pathway. This wide range of reaction conditions underlines the complicated task of imderstanding and predicting chemical reaction events. 

A numerical study of the effect of area ratio on the flow distribution in parallel flow manifolds used in a Hquid cooling module for electronic packaging demonstrate the useflilness of such a computational fluid dynamic code. The manifolds have rectangular headers and channels divided with thin baffles, as shown in Figure 12. Because the flow is laminar in small heat exchangers designed for electronic packaging or biochemical process, the inlet Reynolds numbers of 5, 50, and 250 were used for three different area ratio cases, ie, AR = 4, 8, and 16. 

Hundreds of metabohc reac tions take place simultaneously in cells. There are branched and parallel pathways, and a single biochemical may participate in sever distinct reactions. Through mass action, concentration changes caused by one reac tion may effect the kinetics and equilibrium concentrations of another. In order to prevent accumulation of too much of a biochemical, the product or an intermediate in the pathway may slow the production of an enzyme or may inhibit the ac tivation of enzymes regulating the pathway. This is termed feedback control and is shown in Fig. 24-1. More complicated examples are known where two biochemicals ac t in concert to inhibit an enzyme. As accumulation of excessive amounts of a certain biochemical may be the key to economic success, creating mutant cultures with defective metabolic controls has great value to the produc tion of a given produc t. 

A microscopic, ordered array of nucleic acids, proteins, small molecules, cells or other substances that enables parallel analysis of complex biochemical samples. 

Biochemical reactions parallel those in organic chemistry and, for both of them, a mechanistic approach has proved valuable. In addition, most of the principles that have emerged apply equally to the aquatic, the atmospheric, and the terrestrial environments. 

In recent years it has been realized that molecular modeling studies of the alkaloidal molecules having different pharmacological activities are highly important in order to explain their mechanisms, at least partially in some cases. This chapter presents and critically reviews some examples of molecular modeling studies of alkaloids, based on their different biological properties or sometimes performed in parallel to explain their biochemical effects. 

Finally, animal, plant and microbial tissues have been shown to contain the iron storage protein ferritin. The animal protein has been extensively studied, but the mechanism of iron binding has not been completely resolved (29). Animal tissues contain, in addition, a type of granule comprised of iron hydroxide, polysaccharide and protein. The latter, called hemosiderin, may represent a depository of excess iron (30). Interestingly, a protein with properties parallel to those of ferritin has been found in a mold. Here the function of the molecule can be examined with the powerful tools of biochemical genetics (31). 

Cellular signals converge at the level of protein phosphorylation pathways. Individual intracellular messenger pathways, such as cAMP, Ca2+ and MAPK pathways, are often drawn as distinct biochemical cascades that operate in parallel in the control of cell function. While this is useful for didactic purposes, it is now well established that these various pathways function as complex webs, with virtually every conceivable type of interaction seen among them. 

The type of enzyme sensor described above is highly selective and can be sensitive in operation. There are obvious applications for the determination of small amounts of oxidizable organic compounds. However, it is perhaps too early to give a realistic assessment of the overall importance of enzyme sensors to analytical chemistry. This is especially so because of parallel developments in other biochemical sensors which may be based upon a quite different physical principle. 

Hepburn, H. R., Chandler, H. D., and Davidoff, M. R. (1979). Extensometric properties of insect fibroins The green lacewing cross-/ , honeybee a-helical and greater wax-moth parallel-/ conformations. Insect Biochem. 9, 69-77. 

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