Biochemical condensation reactions

Thiazolium derivatives unsubstituted at the 2-position (35) are potentially interesting precursors of A-4-thiazoline-2-thiones and A-4-thiazoline-2-ones. Compound 35 in basic medium undergoes proton abstraction leading to the very active nucleophilic species 36a and 36b (Scheme 16) (43-46). Special interest has been focused upon the reactivity of 36a and 36b because they are considered as the reactive species of the thiamine action in some biochemical reaction, and as catalysts for several condensation reactions (47-50). 

Phosphate condensation reactions play an essential role in metabolism. Recall from Section 14.6 that the conversion of adenosine diphosphate (ADP) to adenosine triphosphate (ATP) requires an input of free energy ADP -I-H3 PO4 ATP +H2O AG° — +30.6kJ As also described in that section, ATP serves as a major biochemical energy source, releasing energy in the reverse, hydrolysis, reaction. The ease of interchanging O—H and O—P bonds probably accounts for the fact that nature chose a phosphate condensation/hydrolysis reaction for energy storage and transport. 

Coenzyme A and pantothenic acid function as acyl group carriers and play a key role in biochemical Claisen condensation reactions. 

The Letsinger-Caruthers synthesis is unrelated to the biochemical one except in the area of efficiency. Because phosphites are so reactive, they would be totally unsuitable for the genetic tape itself, but because they are so reactive, they are ideally suited as intermediates in the chemical synthesis of polynucleotides. One can accomplish the needed condensation reactions with phosphites under strictly anhydrous conditions with very weakly acidic catalysts, and then stabilize the product by a mild oxidation of the phosphite to the desired phosphate with iodine. 

The polyketide synthesis chemically and biochemically resembles that of fatty acids. The reaction of fatty acid synthesis is inhibited by the fungal product ceru-lenin [9]. It inhibits all known types of fatty acid synthases, both multifunctional enzyme complex and unassociated enzyme from different sources like that of some bacteria, yeast, plants, and mammalians [10]. Cerulenin also blocks synthesis of polyketides in a wide variety of organisms, including actinomycetes, fungi, and plants [11, 12]. The inhibition of fatty acid synthesis by cerulenin is based on binding to the cysteine residue in the condensation reaction domain [13]. Synthesis of both polyketide and fatty acids is initiated by a Claisen condensation reaction between a starter carboxylic acid and a dicarboxylic acid such as malonic or methylmalonic acid. An example of this type of synthesis is shown in Fig. 1. An acetate and malonate as enzyme-linked thioesters are used as starter and extender, respectively. The starter unit is linked through a thioester linkage to the cysteine residue in the active site of the enzymatic unit, p-ketoacyl ACP synthase (KS), which catalyzes the condensation reaction. On the other hand, the extender... 

Humic substances represent a broad spectrum of different compounds. In the formation of humic substances saccharides, pectins, lignin, proteins, fats, waxes, resins, tannins, etc. participate. During humification, biochemical and chemical processes take place. Of these, the polymerization and condensation reactions of the products of the degradation of primary organic matter into products which are the result of the humification process are important. 

If the surface is impenetrable and the heterogeneous reaction is not accompanied by a local density change, then the condition of sticking, u = 0 must be satisfied on the surface. Otherwise, near the surface, there arises a convective flux of reactant, which is normal to the surface and directed toward it. This flux is known as Stefan s flux. As a rule, it does not exert a noticeable influence on chemical and biochemical heterogeneous reactions, and can be disregarded. However, in problems involving intense melting, evaporation, or condensation of substance, Stefan s flux may not be small and thus should be taken into account. 

ATP is the principal carrier of biochemical energy. It is considered an energy-rich compound because the hydrolysis of ATP to yield adenosine diphosphate (ADP) and inorganic phosphate is spontaneous under aqueous biochemical conditions. (a) Write a balanced equation for the reaction of ATP with water to yield ADP and inorganic phosphate ion. [Hint Hydrolysis reactions are just the reverse of condensation reactions (Section 22.8).] (b) What would you expect for the sign of the free-ener-gy change for this reaction (c) ADP can undergo further hydrolysis. What would you expect for the product of that reaction ... 

Just as with nucleophilic additions and nucleophilic acyl substitutions, biochemical pathways make frequent use of a-substitution and carbonyl condensation reactions. In fact, practically every biosynthetic pathway for building up larger molecules from smaller precursors uses carbonyl condensation reactions for the purpose. We ll see how and why these reactions occur in this chapter. 

This section presents tire basic tlieoretical principles of condensed phase electron transport in chemical and biochemical reactions. 

Clearly, the nex.t step will be to investigate the physicochemical effects, such as charge distribution and inductive and resonance effects, at the reaction center to obtain a deeper insight into the mechanisms of these biochemical reactions and the finer details of similar reactions. Here, it should be emphasized that biochemical reactions arc ruled and driven basically by the same effects as organic reactions. Figure 10.3-22 compares the Claisen condensation of acetic esters to acctoacctic esters with the analogous biochemical reaction in the human body. 

The synthesis of five-, six-, and seven-membered cyclic esters or timides uses intramolecular condensations under the same reaction condifions as described for intermolecular reactions. Yields are generally excellent. An example from the colchicine synthesis of E.E. van Ta-melen (1961) is given below. The synthesis of macrocyclic lactones (macrolides) and lactams (n > 8), however, which are of considerable biochemical and pharmacological interest, poses additional problems because of competing intermolecular polymerization reactions (see p. 246ff.). Inconveniently high dilution, which would be necessary to circumvent this side-... 

The second line of circumstantial evidence quoted in support of this hypothesis is the ready formation of l,2,3,4-tetrahydro-/3-carboline derivatives under pseudo-physiological conditions of temperature, pH, and concentration. Tryptamine and aldehydes, trypt-amine and a-keto acids, and tryptophan and aldehydes condense at room temperature in a Pictet-Spengler type intramolecular Mannich reaction in the pH range 5.2-8.0 (cf. Section III, A, 1, a). It was argued that experiments of this type serve as models for biochemical reactions and may be used in evidence. 

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