Binding structure specificity

Murthy, V.L., 5tern, L.J. The class II MHC protein HLA-Drl in complex with an endogenous peptide implications for the structural basis of the specificity of peptide binding. Structure 5 1385-1396, 1997. 

Finally, the binding of specific transcription factors to cognate DNA elements may result in disruption of nucleosomal structure. Many eukaryotic genes have multiple protein-binding DNA elements. The serial binding of transcription factors to these elements—in a combinatorial fashion—may either directly disrupt the structure of the nucleosome or prevent its re-formation or recruit, via protein-protein interactions, multiprotein coactivator complexes that have the ability to covalently modify or remodel nucleosomes. These reactions result in chromatin-level structural changes that in the end increase DNA accessibifity to other factors and the transcription machinery. 

Chemokines are small chemotactic cytokines that act as important messenger molecules between cells of the immune system. Chemokines produce their effects by activating a family of G-protein-coupled receptors. Chemokine receptors are all seven-transmembrane glycoproteins that are structurally related. They may be characterized into those that bind to specific ligands, or those that bind several chemokine ligands. There are also virally encoded (viral) chemokine receptors that represent shared receptors that have been transduced into the viral genome during evolutionary history (Premack and SchaU 1996). 

Most in vitro studies of xanthines have centered around the enzyme xanthine oxidase. Bergmann and co-workers 40-4)) have examined the main oxidative pathways in the xanthine oxidase catalyzed oxidation of purines. The mechanism proposed by these workers 41 > is that the enzyme binds a specific tautomeric form of the substrate, regardless of whether or not that form represents the major structure present in solution. It is then proposed that the purine, e.g., xanthine, undergoes hydration at the N7=C8 double bond either prior to or simultaneously with dehydrogenation of the same position. Accordingly, the process would involve either pathway a or b. Fig. 15. Route a would give a lactim form of the oxidized purine, while b would give the cor-... 

Aptamers are single-stranded DNA or RNA-based sequences that fold up to adopt a unique three-dimensional structure, allowing them to bind a specific target molecule. 

In an immunosensor the core-cover interface of an optical waveguide structure is coated with a chemo-optical transducer receptor layer, which can selectively bind to specific analyte molecules present in the cover medium. The receptor-analyte reaction obeys the law of mass action, which states that the rate of a reaction is proportional to the concentration of the reactants. At equilibrium, the rate of formation of the receptor-analyte complex is equal to the rate of breaking, and the equilibrium constant, K. can be written as... 

The X-ray structures of other aconitases have appeared in the literature. Recently, the crystal structure of human iron regulatory protein, IRPl, in its aconitase form, has been published. Iron regulatory proteins (IRPs) control the translation of proteins involved in iron uptake, storage, and utilization by binding to specific noncoding sequences of the corresponding mRNAs known... 

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