ATP/ADP

Zigmond, 1988). The ATP-hydrolysis that accompanies actin polymerization, ATP —> ADP + Pj, and the subsequent release of the cleaved phosphate (Pj) are believed to act as a clock (Pollard et ah, 1992 Allen et ah, 1996), altering in a time-dependent manner the mechanical properties of the filament and its propensity to depolymerize. Molecular dynamics simulations suggested a so-called back door mechanism for the hydrolysis reaction ATP ADP - - Pj in which ATP enters the actin from one side, ADP leaves from the same side, but Pj leaves from the opposite side, the back door (Wriggers and Schulten, 1997b). This hypothesis can explain the effect of the toxin phalloidin which blocks the exit of the putative back door pathway and, thereby, delays Pi release as observed experimentally (Dancker and Hess, 1990). 

Rya.nia., The root and stem of the plant yania speciosa family Flacourtiaceae, native to South America, contain from 0.16—0.2% of iasecticidal components, the most important of which is the alkaloid ryanodine [15662-33-9] C25H250 N (8) (mp 219—220°C). This compound is effective as both a contact and a stomach poison. Ryanodine is soluble ia water, methyl alcohol, and most organic solvents but not ia petroleum oils. It is more stable to the action of air and light than pyrethmm or rotenone and has considerable residual action. Ryania has an oral LD q to the rat of 750 mg/kg. The material has shown considerable promise ia the control of the European com borer and codling moth and is used as a wettable powder of ground stems or as a methanohc extract. Ryanodine uncouples the ATP—ADP actomyosia cycle of striated muscle. 

Even this set of equations represents an approximation, because ATP, ADP, and Pi all exist in solutions as a mixture of ionic species. This problem is discussed in a later section. For now, it is enough to note that the free energy changes listed in Table 3.3 are the group transfer potentials observed for transfers to water. 

So far, as in Equation (3.33), the hydrolyses of ATP and other high-energy phosphates have been portrayed as simple processes. The situation in a real biological system is far more complex, owing to the operation of several ionic equilibria. First, ATP, ADP, and the other species in Table 3.3 can exist in several different ionization states that must be accounted for in any quantitative analysis. Second, phosphate compounds bind a variety of divalent and monovalent cations with substantial affinity, and the various metal complexes must also be considered in such analyses. Consideration of these special cases makes the quantitative analysis far more realistic. The importance of these multiple equilibria in group transfer reactions is illustrated for the hydrolysis of ATP, but the principles and methods presented are general and can be applied to any similar hydrolysis reaction. 

Through all these calculations of the effect of pH and metal ions on the ATP hydrolysis equilibrium, we have assumed standard conditions with respect to concentrations of all species except for protons. The levels of ATP, ADP, and other high-energy metabolites never even begin to approach the standard state of 1 M. In most cells, the concentrations of these species are more typically 1 to 5 mM or even less. Earlier, we described the effect of concentration on equilibrium constants and free energies in the form of Equation (3.12). For the present case, we can rewrite this as... 

Fructose is present outside a cell at 1 /iM concentration. An active transport system in the plasma membrane transports fructose into this cell, using the free energy of ATP hydrolysis to drive fructose uptake. Assume that one fructose is transported per ATP hydrolyzed, that ATP is hydrolyzed on the intracellular surface of the membrane, and that the concentrations of ATP, ADP, and Pi are 3 mM, 1 mM, and 0.5 mM, respectively. T = 298 K. What is the highest intracellular concentration of fructose that this transport system can generate Hint Kefer to Chapter 3 to recall the effects of concentration on free energy of ATP hydrolysis.)... 

The overall direction of the reaction will be determined by the relative concentrations of ATP, ADP, Cr, and CrP and the equilibrium constant for the reaction. The enzyme can be considered to have two sites for substrate (or product) binding an adenine nucleotide site, where ATP or ADP binds, and a creatine site, where Cr or CrP is bound. In such a mechanism, ATP and ADP compete for binding at their unique site, while Cr and CrP compete at the specific Cr-, CrP-binding site. Note that no modified enzyme form (E ), such as an E-PO4 intermediate, appears here. The reaction is characterized by rapid and reversible binary ES complex formation, followed by addition of the remaining substrate, and the rate-determining reaction taking place within the ternary complex. 

Inhibitors of Oxidative Phosphorylatioi Unconplers Disrupt die Coupling of Electron Transport and ATP Synthase ATP Exits die Mitochondria via an ATP-ADP Transloca.se... 

FIGURE 21.26 ATP production in the presence of a proton gradient and ATP/ADP exchange in the absence of a proton gradient. Exchange leads to incorporation of in phosphate as shown. 

What is the cost of ATP-ADP exchange relative to the energy cost of ATP synthesis itselD We already noted that moving 1 ATP out and 1 ADP in is the equivalent of one proton moving from the cytosol to the matrix. Synthesis of an... 

FIGURE 21.32 Outward transport of ATP (via the ATP/ADP transloease) is favored by the membrane electrochemical potential. 

ATP results from the movement of approximately three protons from the cytosol into the matrix through Fg. Altogether this means that approximately four protons are transported into the matrix per ATP synthesized. Thus, approximately one-fourth of the energy derived from the respiratory chain (electron transport and oxidative phosphorylation) is expended as the electrochemical energy devoted to mitochondrial ATP-ADP transport. 

The situation in bacteria is somewhat different. Prokaryotic cells need not carry out ATP/ADP exchange. Thus, bacteria have the potential to produce approximately 38 ATP per glucose. 

Assuming that 3 H are transported per ATP synthesized in the mitochondrial matrix, the membrane potential difference is 0.18 V (negative inside), and the pH difference is 1 unit (acid outside, basic inside), calculate the largest ratio of [ATP]/[ADP] [P,] under which synthesis of ATP can occur. 

Under these conditions, what is the maximum ratio of [ATP]/[ADP] attainable by oxidative phosphorylation when [PJ = 1 mM (Assume AG° for ATP synthesis = +30.5 kj/mol.)... 

Assuming that the concentrations of ATP, ADP, and P in chloroplasts are 3 mM, 0.1 mM, and 10 mM, respectively, what is the AG for ATP synthesis under these conditions Photosynthetic electron transport establishes the proton-motive force driving photophosphorylation. What redox potential difference is necessary to achieve ATP synthesis under the foregoing conditions, assuming an electron pair is transferred per molecule of ATP generated ... 

By structural complementarity, dicationic l,4-diazabicyclo[2.2.2]octane (VII) provides an appropriate recognition site for phosphate ions and two stearyl side chains attached to the amines add lipophilic properties 59,60). Such a carrier model can selectively extract nucleotides from aqueous solution to chloroform solution via lipophilic salt formation. The order of nucleotide affinity is ATP > ADP > AMP. The selectivity ratios were 45 for ADP/AMP and 7500 for ATP/AMP at pH 3. The relative transport rate was ATP > ADP > AMP. The ratios were 60 for ATP/AMP and 51 for ADP/AMP. The modes of interaction of ADP and ATP are proposed to be as shown in Fig. 6. 

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