Atomic force microscopy applications

Flansma P K, Elings V B, Marti O and Bracker C E 1988 Scanning tunnelling microscopy and atomic force microscopy application to biology and technology Science 242 209... 

Hansma, P.K. Elings, V.B. Marti, O. Bracker, C.E. Scanning tunneling microscopy and atomic force microscopy Application to biology and technology. Science 1988, 242, 209-216. 

P.K. Hansma. V.B. Elings. O. Marti and C.E. Bracker, Scanning Tunneling Microscopy and Atomic Force Microscopy Application to Biology and Technology, Science 242 (1988) 209 (very informative review). 

McPherson, A., Malkin, A. J., Kuznetsov, Y. G., and Plomp, M. 2001. Atomic force microscopy applications in macromolecular crystallography, Acta Crystallogr D Biol Crystallogr 57,1053-1060. 

Annis B K, Noid D W, Sumpter B G, Reffner J R and Wunderlich B 1992 Application of atomic force microscopy (AFM) to a block copolymer and an extended chain polyethylene Makromol. Chem., Rapid. Commun. 13 169 Annis B K, Schwark D W, Reffner J R, Thomas E L and Wunderlich B 1992 Determination of surface morphology of diblock copolymers of styrene and butadiene by atomic force microscopy Makromol. Chem. 193 2589... 

Lai R and John S A 1994 Biological applications of atomic-force microscopy Am. J. Physiol. 266 Cl... 

Experimental techniques based on the application of mechanical forces to single molecules in small assemblies have been applied to study the binding properties of biomolecules and their response to external mechanical manipulations. Among such techniques are atomic force microscopy (AFM), optical tweezers, biomembrane force probe, and surface force apparatus experiments (Binning et al., 1986 Block and Svoboda, 1994 Evans et ah, 1995 Israelachvili, 1992). These techniques have inspired us and others (see also the chapters by Eichinger et al. and by Hermans et al. in this volume) to adopt a similar approach for the study of biomolecules by means of computer simulations. 

Abstract. Molecular dynamics (MD) simulations of proteins provide descriptions of atomic motions, which allow to relate observable properties of proteins to microscopic processes. Unfortunately, such MD simulations require an enormous amount of computer time and, therefore, are limited to time scales of nanoseconds. We describe first a fast multiple time step structure adapted multipole method (FA-MUSAMM) to speed up the evaluation of the computationally most demanding Coulomb interactions in solvated protein models, secondly an application of this method aiming at a microscopic understanding of single molecule atomic force microscopy experiments, and, thirdly, a new method to predict slow conformational motions at microsecond time scales. 

As an example for an efficient yet quite accurate approximation, in the first part of our contribution we describe a combination of a structure adapted multipole method with a multiple time step scheme (FAMUSAMM — fast multistep structure adapted multipole method) and evaluate its performance. In the second part we present, as a recent application of this method, an MD study of a ligand-receptor unbinding process enforced by single molecule atomic force microscopy. Through comparison of computed unbinding forces with experimental data we evaluate the quality of the simulations. The third part sketches, as a perspective, one way to drastically extend accessible time scales if one restricts oneself to the study of conformational transitions, which arc ubiquitous in proteins and are the elementary steps of many functional conformational motions. 

Hayes, R.A. and Ralston, J., Application of atomic force microscopy in fundamental adhesion studies. In Mittal, K.L. and Pizzi, A. (Eds.), Adhesion Promotion Techniques — Technological Applications. Dekker, New York, 1999, pp. 121-138. 

The very new techniques of scanning tunnelling microscopy (STM) and atomic force microscopy (AFM) have yet to establish themselves in the field of corrosion science. These techniques are capable of revealing surface structure to atomic resolution, and are totally undamaging to the surface. They can be used in principle in any environment in situ, even under polarization within an electrolyte. Their application to date has been chiefly to clean metal surfaces and surfaces carrying single monolayers of adsorbed material, rendering examination of the adsorption of inhibitors possible. They will indubitably find use in passive film analysis. 

It is our experience that to the first question, the most common student response is something akin to Because my teacher told me so . One is tempted to say that it is a pity that the scientific belief of so mat r students is sourced from an authority, rather than from empirical evidence - except that when chemists are asked question (ii), they find it not at all easy to answer. There is, after all, no single defining experiment that conclusively proves the claim, even though it was the phenomenon of Brownian motion that finally seems to have clinched the day for the atomists 150 or so years ago. Of course, from atomic forced microscopy (AFM), we see pictures of gold atoms being manipulated one by one - but the output from AFM is itself the result of application of interpretive models. 

A Review of the Application of Atomic Force Microscopy (AFM) in Food Science and Technology... 

Despite H/D kinetic isotope studies, application of modern techniques such as atomic force microscopy (AFM), electrochemical mass spectrometry (EMS) [60], and electrochemical quartz microbalance (EQCM), the mechanism of electroless nickel and cobalt, whatever reducing agent is involved, continues to be the subject of much discussion and varying opinions. 

Atomic force microscopy (AFM) or, as it is also called, scanning force microscopy (SFM) is the most generally applicable member of the scanning probe family. It is based on the minute but detectable forces - order of magnitude nano-Newtons -between a sharp tip and atoms in the surface [39]. The tip is mounted on a flexible arm called a cantilever, and is positioned at a subnanometer distance from the surface. If the sample is scanned under the tip in the x-y plane, it feels the attractive or repulsive force from the surface atoms and hence is deflected in the z direction. Various methods exist to measure the deflection, as described by Sarid [40]. Before we describe equipment and applications to catalysts, we will briefly look at the theory behind AFM. 

Silicomanganese, 15 556 low carbon, 15 555—556 world production of, 15 550—551t Silicomanganese, 22 519 Silicomanganese furnace, 15 553, 555 Silicomanganese production, 15 555—556 Silicon (Si), 9 731-733, 22 480-501, 502-511. See also Doped silicon re-type (negative) silicon p-type (positive) silicon Ribbon silicon Sheet silicon Amorphous silicon (a-Si) Si-hybrid sealants Silica entries analytical methods for, 22 498—499 in aluminum alloys, 22 508, 509, 510 applications of, 22 499, 508—509 atomic force microscopy of etching, 3 333-337... 

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