Anisotropy time dependence

Table 1. Expressions for the anisotropy time dependence used through the paper...

This method has been devised as an effective numerical teclmique of computational fluid dynamics. The basic variables are the time-dependent probability distributions f x, f) of a velocity class a on a lattice site x. This probability distribution is then updated in discrete time steps using a detenninistic local rule. A carefiil choice of the lattice and the set of velocity vectors minimizes the effects of lattice anisotropy. This scheme has recently been applied to study the fomiation of lamellar phases in amphiphilic systems [92, 93]. 

The present review shows how the microhardness technique can be used to elucidate the dependence of a variety of local deformational processes upon polymer texture and morphology. Microhardness is a rather elusive quantity, that is really a combination of other mechanical properties. It is most suitably defined in terms of the pyramid indentation test. Hardness is primarily taken as a measure of the irreversible deformation mechanisms which characterize a polymeric material, though it also involves elastic and time dependent effects which depend on microstructural details. In isotropic lamellar polymers a hardness depression from ideal values, due to the finite crystal thickness, occurs. The interlamellar non-crystalline layer introduces an additional weak component which contributes further to a lowering of the hardness value. Annealing effects and chemical etching are shown to produce, on the contrary, a significant hardening of the material. The prevalent mechanisms for plastic deformation are proposed. Anisotropy behaviour for several oriented materials is critically discussed. 

Instead of measuring only the time-dependent dipolar interaction via NOE, it is also possible to determine dipolar couplings directly if the solute molecule is partially aligned in so-called alignment media. The most important resulting anisotropic parameters are RDCs, but residual quadrupolar couplings (RQCs), residual chemical shift anisotropy (RCSA) and pseudo-contact shifts (PCSs) can also be used for structure determination if applicable. 

NFS spectra recorded at 300 K for -cut and c-cut crystals are shown in Fig. 9.17 [48]. The/factors for the two orientations were derived from the speed-up of the nuclear decay (i.e., from the slope of the time-dependent intensity in Fig. 9.17a and from the slope of the envelope in Fig. 9.17b). The factors obtained f ( P = 0.122 (10) and f = 0.206(10) exhibit significant anisotropic vibrational behavior of iron in GNP. This anisotropy in f is the reason for the observed asymmetry in the line intensity of the quadrupole doublet (in a conventional Mossbauer spectrum in the energy domain) of a powder sample of GNP caused by the Goldanskii-Karyagin effect [49]. 

Time-dependent anisotropy measurements 6.2.7.1 Pulse fluorometry... 

The time dependence of emission anisotropy is defined as (see Chapter 5) ... 

With the development of multifrequency phase-modulation technology, Lakowicz and co-workers(171) were able to examine the time dependence of the anisotropy decay of BPTI. They noted that the intensity decay of the fluorescence is best fit by a biexponential decay law and that the anisotropy decay is also complex. At 25 °C and pH 6.5, correlation times of 39 ps and 2.25 ns were recovered from analysis of data obtained over the range 20 MHz to 2 GHz. The longer correlation time is close to that predicted for the overall rotational motion of a molecule of the size of BPTI. They indicated, however, that additional experiments need to be done to resolve whether the 39-ps... 

The major reasons for using intrinsic fluorescence and phosphorescence to study conformation are that these spectroscopies are extremely sensitive, they provide many specific parameters to correlate with physical structure, and they cover a wide time range, from picoseconds to seconds, which allows the study of a variety of different processes. The time scale of tyrosine fluorescence extends from picoseconds to a few nanoseconds, which is a good time window to obtain information about rotational diffusion, intermolecular association reactions, and conformational relaxation in the presence and absence of cofactors and substrates. Moreover, the time dependence of the fluorescence intensity and anisotropy decay can be used to test predictions from molecular dynamics.(167) In using tyrosine to study the dynamics of protein structure, it is particularly important that we begin to understand the basis for the anisotropy decay of tyrosine in terms of the potential motions of the phenol ring.(221) For example, the frequency of flips about the C -C bond of tyrosine appears to cover a time range from milliseconds to nanoseconds.(222)... 

G. B. Strambini and W. C. Galley, Time-dependent phosphorescence anisotropy... 

This problem does not exist with time-dependent fluorescence polarization measurements where the decay of the emission anisotropy r(t) is obtained by determining the decay of Iz and Ix according to eq 12. 

We measured the time-dependent anisotropy of 1-pyrene carboxaldehyde in sulfonate A and B systems. The results are shown in Figure 2. Relaxation times determined from the unconvoluted anisotropy decays for sulfonates A and B in heptane solution were found to be 7 ns and 28 ns, respectively. 

The internal rotational relaxation times of 1-pyrene carboxaldehyde in sulfonate systems may offer some indication of the extent of probe binding to the inverted micelle. In the absence of any background fluorescence interference to the time-dependent anisotropy decay profile, the internal rotational relaxation time should correlate with the strength of binding with the polar material in the polar core. However, spectral interference from the aromatic moieties of sulfonates is substantial, so that the values of internal rotational relaxation time can only be used for qualitative comparison. 

Reticulum ATPase [105,106], Owing to the long-lived nature of the triplet state, Eosin derivatives are suitable to study protein dynamics in the microsecond-millisecond range. Rotational correlation times are obtained by monitoring the time-dependent anisotropy of the probe s phosphorescence [107-112] and/or the recovery of the ground state absorption [113— 118] or fluorescence [119-122], The decay of the anisotropy allows determination of the mobility of the protein chain that cover the binding site and the rotational diffusion of the protein, the latter being a function of the size and shape of the protein, the viscosity of the medium, and the temperature. 

PAC atomic probes (e.g., mIn or mHf) possess a nuclear quadrupole moment and a magnetic dipole. Even if no field acts on the PAC nucleus, the successive emission of the y-photons through an intermediate state exhibits an appreciable angular anisotropy between the emission directions. If the (isolated) nucleus is then brought into a perturbing field (e.g., on a specific lattice site which is next to a vacancy), the angular anisotropy becomes time-dependent due to the precession of the nuclear spin. For example, if the PAC nucleus in the crystal is exposed to a (static) electric... 

The application of an external field onto many materials will induce optical anisotropy. If the applied field oscillates, a time-dependent modulation of the polarization of the light transmitted by the device will result. Modulators of this sort include photoelastic modulators (PEM) [30,31], Faraday cells [32], Kerr cells [32], and Pockel cells. 

The simplified schematic in Figure 2a shows the essential features of the effect. Optically anisotropic molecules in the solution are preferentially oriented by the applied field E(t), resulting in a difference of refractive indices for components of polarized light parallel and perpendicular to the bias field which is measured as a birefringence. The basic theoretical problem is to evaluate this effect in terms of anisotropies of polarizability Aa. referred to molecular axes which produce a time dependent effect when the molecules are preferentially oriented by the field. For no anisotropy in absence of the field, the effect must be an evgn function of field strength, and at low fields proportional to E. A remarkable feature of the effect is that for molecules with permanent dipole moments the response af-... 

Anisotropy measurements yield information on molecular motions taking place during the fluorescence lifetime. Thus, measuring the time-dependent decay of fluorescence anisotropy provides information regarding rotational and diffusive motions of macromolecules (Wahl and Weber, 1967). Time-resolved anisotropy is determined by placing polarizers in the excitation and emission channels, and measuring the fluorescence decay of the parallel and perpendicular components of the emission. 

Using time-dependent perturbation theory and taking full account of the symmetry and commutation relations for the high-order dipolar Hamiltonians, Hohwy et al.61 69 gave a systematic analysis of homonuclear decoupling under sample rotation and proposed a novel approach to the design of multiple-pulse experiments. Based on the theoretical analysis, they proposed a pulse sequence that can average dipolar interaction up to the fifth order. One example of these pulse sequences is shown at the top of Fig. 3. This sequence is sufficiently powerful that it is possible to obtain precise measurement of proton chemical shift anisotropies, as shown in Fig. 3. 

To experimentally probe the CO trajectory after dissociation, ultrafast time-resolved polarized mid-IR spectra of photolyzed h-MbCO in G/W were recorded (34), the results of which are plotted in Fig. 8A. This study was performed in G/W primarily because the flatness of the solvent absorbance spectrum near 2100 cm-1 minimizes temporal distortion of the transmitted femtosecond IR probe pulse, thereby maximizing the effective time resolution of the measurement. Two features are already apparent at 0.2 ps, the earliest time shown, and these features rapidly develop into the docked states denoted Bi and B2. The development of the docked CO spectrum is further quantified by the time dependence of the polarization anisotropy, as defined in Equation (2). The B and B2 polarization anisotropies, plotted in Fig. 8B, evolve exponentially with time constants of 0.20 0.05 ps and 0.52 0.10 ps, respectively, and converge to the same anisotropy of approximately 0.2. According to Fig. 8C, ligand translocation is accompanied by a 1.6 0.3 ps growth of the integrated isotropic B-state absorbance. 

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