Amino cyclic configuration

The somatostatin analog depreotide consists of ten amino acids containing the key ssts-hinding amino acid residues - Tyr-(D-Trp)-Lys-Val - protected in a cyclic configuration, increasing in vivo stability. Depreotide binds with high affinity to sst-positive tumors and their metastases (Vallabhajosula et al. 1996). 

FIGURE 6.1 Constitutional factors affecting the reactivity of functional groups. (A) The reactivity of W depends on the location of the residue. (B) The amino group of a dipeptide ester reacts with the ester carbonyl to form a cyclic dipeptide amino groups of other peptide esters do not react in this manner. (C, D) Reactions between residues of identical configuration do not occur at the same rates as reactions between residues of opposite configuration. 

Peptide Vaccines Peptide vaccines are chemically synthesized and normally consist of 8-24 amino acids. In comparison with protein molecules, peptide vaccines are relatively small. They are also known as peptidomimetic vaccines, as they mimic the epitopes. Complex structures of cyclic components, branched chains, or other configurations can be built into the peptide chain. In this way, they possess conformations similar to the epitopes and can be recognized by immune cells. An in silico vaccine design approach has been used to find potential epitopes. A critical aspect of peptide vaccines is to produce 3D structures similar to the native epitopes of the pathogen. 

Table 1 Some naturally occurring simple cyclic dipeptides in the protist and plant kingdoms Diketopiperazine (all amino acids are in the L-configuration) Species...

From Nocardia strains several closely related compounds (nocobactins, formo-bactin, amamistatins) were isolated that contain three typically Fe " binding sites, two hydroxamate units, and ahydroxyphenyloxazole stmcture (cf. Sect. 3.2 below). The C-terminus is A-hydroxy-cyc/o-Lys bound to a long chain 3-hydroxy fatty acid, whose hydroxy group is esterified by A -acyl-A -hydroxy-Lys, the a-amino group of which is bound to 2-o-hydroxyphenyl-5-methyl-oxazole-4-carboxylic acid (Table 4). For the amamistatins the configuration of the cyclic lysine was determined as L, the open one as d, and that of C-3 of the fatty acid as (S). The involvement in the iron metabolism was not investigated. 

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