Amino acids hemoglobins

Figure 2-1 S3. The ViewerLite shows an elaborate depiction of hemoglobin on the right-hand side, with the amino acids in a cascade window on the left.

Proteins may consist exclusively of a polymeric chain of amino acids these are the simple proteins. Quite often some other chemical component is covalendy bonded to the amino acid chain. Glycoproteins and Hpoproteins contain sugar and Hpid components, respectively. Porphyrins are frequently associated with proteins, eg, in hemoglobin. Proteins bound to other chemical components are called conjugated proteins. Most enzymes are conjugated proteins. 

Lesk and Chothia did find, however, that there is a striking preferential conservation of the hydrophobic character of the amino acids at the 59 buried positions, but that no such conservation occurs at positions exposed on the surface of the molecule. With a few exceptions on the surface, hydrophobic residues have replaced hydrophilic ones and vice versa. However, the case of sickle-cell hemoglobin, which is described below, shows that a charge balance must be preserved to avoid hydrophobic patches on the surface. In summary, the evolutionary divergence of these nine globins has been constrained primarily by an almost absolute conservation of the hydro-phobicity of the residues buried in the helix-to-helix and helix-to-heme contacts. 

Sickle-cell anemia is the classic example of an inherited disease that is caused by a change in a protein s amino acid sequence. Linus Pauling proposed in 1949 that it was caused by a defect in the hemoglobin molecule he thus coined the term molecular disease. Seven years later Vernon Ingram showed that the disease was caused by a single mutation, a change in residue 6 of the P chain of hemoglobin from Glu to Val. 

FIGURE 5.13 Two basic types of biological transport are (a) transport within or between different cells or tissues and (b) transport into or out of cells. Proteins function in both of these phenomena. For example, the protein hemoglobin transports oxygen from the lungs to actively respiring tissues. Transport proteins of the other type are localized in cellular membranes, where they function in the uptake of specific nutrients, such as glucose (shown here) and amino acids, or the export of metabolites and waste products. 

As noted, hemoglobin is an tetramer. Each of the four subunits has a conformation virtually identical to that of myoglobin. Two different types of subunits, a and /3, are necessary to achieve cooperative Oa-binding by Hb. The /3-chain at 146 amino acid residues is shorter than the myoglobin chain (153 residues), mainly because its final helical segment (the H helix) is shorter. The a-chain (141 residues) also has a shortened H helix and lacks the D helix as well (Figure 15.28). Max Perutz, who has devoted his life to elucidating the atomic structure of Hb, noted very early in his studies that the molecule was... 

A model for the allosteric behavior of hemoglobin is based on recent observations that oxygen is accessible only to the heme groups of the a-chains when hemoglobin is in the T conformational state. Perutz has pointed out that the heme environment of /3-chains in the T state is virtually inaccessible because of steric hindrance by amino acid residues in the E helix. This hindrance dis-... 

The amino acid sequence in hemoglobin, with 574 units, is known. 

This series in heterocychc chemistry is being introduced to collectively make available critically and comprehensively reviewed hterature scattered in various journals as papers and review articles. All sorts of heterocyclic compounds originating from synthesis, natural products, marine products, insects, etc. will be covered. Several heterocyclic compounds play a significant role in maintaining life. Blood constituents hemoglobin and purines, as well as pyrimidines, are constituents of nucleic acid (DNA and RNA). Several amino acids, carbohydrates, vitamins, alkaloids, antibiotics, etc. are also heterocyclic compounds that are essential for life. Heterocyclic compounds are widely used in clinical practice as drugs, but all applications of heterocyclic medicines can not be discussed in detail. In addition to such applications, heterocyclic compounds also find several applications in the plastics industry, in photography as sensitizers and developers, and the in dye industry as dyes, etc. 

Under physiologic conditions in the human adult, 1—2 X 10 erythrocytes are destroyed per hour. Thus, in 1 day, a 70-kg human turns over approximately 6 g of hemoglobin. When hemoglobin is destroyed in the body, globin is degraded to its constiment amino acids, which are reused, and the iron of heme enters the iron pool, also for reuse. The iron-free porphyrin portion of heme is also degraded, mainly in the reticuloendothehal cells of the liver, spleen, and bone marrow. 

Figure 38-4. Examples of three types of missense mutations resulting in abnormal hemoglobin chains. The amino acid alterations and possible alterations in the respective codons are indicated. The hemoglobin Hikari p-chain mutation has apparently normal physiologic properties but is electrophoretically altered. Hemoglobin S has a p-chain mutation and partial function hemoglobin S binds oxygen but precipitates when deoxygenated. Hemoglobin M Boston, an a-chain mutation, permits the oxidation of the heme ferrous iron to the ferric state and so will not bind oxygen at all.

The protein that stores iron in the body is called ferritin. A ferritin molecule consists of a protein coat and an iron-containing core. The outer coat is made up of 24 pol3q5eptide chains, each with about 175 amino acids. As Figure 20-27 shows, the pol q5eptides pack together to form a sphere. The sphere is hollow, and channels through the protein coat allow movement of iron in and out of the molecule. The core of the protein contains hydrated iron(HI) oxide, FC2 O3 H2 O. The protein retains its shape whether or not iron is stored on the inside. When filled to capacity, one ferritin molecule holds as many as 4500 iron atoms, but the core is only partially filled under normal conditions. In this way, the protein has the capacity to provide iron as needed for hemoglobin s mthesis or to store iron if an excess is absorbed by the body. 

Imately 65 X 55 X 50 It Is composed of four polypeptide chains each resembling quite closely the myoglobin chain The three dimensional structure of the subunits Is held together by weak noncovalent bonds The polar amino acid side chains are In contact with the solvent, and the nonpolar residues are located In the Interior of the molecule or In regions which form the contacts between chains The heme group Is located In a pocket In each chain residues In contact with heme are Invariable ( e are the same In different mammalian hemoglobins) and the bonds between heme and chain are hydrophobic Interactions Contacts between like chains (a-a are... 

Many are distinguished from Hb-A by electrophoretic or chromatographic methods The number and types of abnormal hemoglobins that have been discovered thus far are Indeed overwhelming At the latest count (December, 1974) at least 135 3-chaln variants, 72 a-chaln variants, 8 6-chaln variants, and 11 y-chaln variants have been found These Include variants with single amino acid substitutions (the majority), variants with two substitutions (the 6-chaln variants, Hb-C-Harlem and Hb-Arllng-ton Park), variants with deletion of one or more residues... 

Detection of Variants With Altered Functional Properties. When substitutions In either a-or 3-chains Involve amino acid residues that participate In the contact with heme or the contact between chains, changes In functional properties can occur and the determination of the oxygen affinity of the blood sample or of an Isolated hemoglobin variant Is desirable. Oxygen affinity Is affected by temperature, pH, salt concentration, the level of 2,3-dlphosphoglycerate (2,3-DPG), and to a lesser extent by the concentration of the hemoglobin. The concentration of 2,3-DPG In blood changes rather rapidly after collection and a... 

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